Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G11
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   2.4  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   4.1  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    24   9.5  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             24   9.5  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = -1

Query: 202 EYFFKTLTGT----PVKFKKCRLNQIAF 131
           EY F   TGT     ++FKKC +N +A+
Sbjct: 564 EYIFSDKTGTLTQNVMEFKKCTINGVAY 591


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 87  GMKEFDXTKTAXFCEKVVLLCILYFVISC 1
           G+ E D +       ++ LLC+ Y ++SC
Sbjct: 92  GILEVDASNEILCFRRICLLCVFYKLLSC 120


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 15  NTKCKAKQLFHKTLQFSXRQILSF 86
           N KC  KQ+    L FS    LSF
Sbjct: 267 NVKCSKKQILFSLLYFSSEVYLSF 290


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 311 YKDKCRALSETSLEPNIPFTCRFLIHL 391
           +K +C+AL  +     +P  CR LI L
Sbjct: 83  HKLECKALQASKQNGILPSVCRLLIRL 109


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 266 HRTVDASTKIKRTFNYKDKCRALSETSLEPNI 361
           H   DA TK + T N     + L+ETS EP++
Sbjct: 439 HDKFDACTKGENTANNGYGPQTLNETSEEPSL 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,256,590
Number of Sequences: 5004
Number of extensions: 17905
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)