Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G09
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.9  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.8  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   5.8  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = -3

Query: 402  IMYYRVFRTCINVCDKFSSLNYS--*DICSLF---LGSFRWCLVYRLVYNKFRN*NSFSN 238
            I+ Y+ +    N CD FS  N+S   DI S +   L SF  C   +L  NK     +FS 
Sbjct: 1188 IITYQNYEMTFNDCDAFSEFNFSLLKDITSKWKDLLESFE-CRRLKLENNKDEILRNFSE 1246

Query: 237  VSMQIDNEKVEVL 199
             + +++ E + ++
Sbjct: 1247 FAKRVNTETLSLI 1259


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 372 INVCDKFSSLNYS*DICSLFLGSFRWCLV--YRLVYNKFRN*NSFSNVSM 229
           INV  K    ++  ++C  FL  FR C +    ++Y  FR  N +SN+ +
Sbjct: 165 INVAKKNKKEDFLVELCLRFLERFRSCNLTEQAILYQNFRE-NWWSNIKL 213


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 438 LNILLFFK*NKDIMYYRVFRTCINVCDK---FSSLNYS*DI 325
           L+  ++ K N+D ++  VFR C N+      F   NYS D+
Sbjct: 177 LSFSIYTKENEDALFNNVFRPCSNIIVSVLVFIFTNYSLDL 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,844
Number of Sequences: 5004
Number of extensions: 62725
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)