Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G09
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-16|AAF60793.1|  170|Caenorhabditis elegans Hypothetical...    51   1e-06
Z30215-5|CAA82938.1|  199|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    28   9.5  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        28   9.5  

>AC024826-16|AAF60793.1|  170|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.1 protein.
          Length = 170

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/40 (52%), Positives = 29/40 (72%)
 Frame = -1

Query: 836 KDNPANFGVGCDRSCMCEVFGQVPCSGVVPLPKFMRGKYK 717
           K NPA+FG   +R CMCEV GQ PC+G++  P+ + GKY+
Sbjct: 125 KLNPADFGSKNERQCMCEVQGQHPCTGLLRAPQCVTGKYR 164


>Z30215-5|CAA82938.1|  199|Caenorhabditis elegans Hypothetical
           protein F40F12.7 protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 422 KRRIFNQQFYFVVHSSVCKSRETISSSF 505
           KR++  QQF  ++H+  C  RE  ++ F
Sbjct: 10  KRKLIQQQFVLLLHAHKCSQREKENNEF 37


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 522 IIMCHECVIRHVIETRST*TLCLQSIDNRL 611
           ++M  E  IRH I+ R   TLC+  ID  L
Sbjct: 238 VMMNTERAIRHAIQERLAVTLCISKIDRLL 267


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 522 IIMCHECVIRHVIETRST*TLCLQSIDNRL 611
           ++M  E  IRH I+ R   TLC+  ID  L
Sbjct: 113 VMMNTERAIRHAIQERLAVTLCISKIDRLL 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,031,052
Number of Sequences: 27780
Number of extensions: 357170
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)