Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G09
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.6  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   3.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 560 YDVSDNTLMTHDNSLFYIKRNLKLFLWIYTQ 468
           YDV  N  M  +  ++  K  ++ FLW Y Q
Sbjct: 57  YDVGRNYDMESNMDMYKDKNVVQKFLWWYKQ 87


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 560 YDVSDNTLMTHDNSLFYIKRNLKLFLWIYTQ 468
           YDV  N  M  +  ++  K  ++ FLW Y Q
Sbjct: 57  YDVGRNYDMESNMDMYKDKNVVQKFLWWYKQ 87


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 578 LRASSLYDVSDNTLMTH 528
           L+ + LY+ SDN L+ H
Sbjct: 102 LKVTRLYEFSDNELLVH 118


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 431 IFNQQFYFVVHSSVCKSRETISSSF*YKTV 520
           +F QQ+ +V+  S+CK R  +S    Y +V
Sbjct: 100 LFWQQYPWVLGVSLCKIRAYVSEMSSYVSV 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,620
Number of Sequences: 438
Number of extensions: 4156
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)