Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G08
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   1.9  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.5  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   2.5  
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    26   4.4  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   5.8  

>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 222 LSSILLGIHDPFVPFENLFCALFM 151
           +S ILL +  PFV F+N FC   +
Sbjct: 506 ISFILLAVFRPFVGFKNSFCVFLV 529


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +1

Query: 118 EQLGQRIPNAAHE*GAEQILKWHEGIVDAQKYGGELKVNKEDNDTEVDECVGSRDQICLL 297
           E + Q  P A  E G + +L++ E I+   KY   ++ N ++     D C     ++ L+
Sbjct: 271 ESIAQMKPRAISE-GDDGLLEYLEDIIGTSKYKPIIEENMQELSNSDDICAEKESRLKLV 329

Query: 298 I 300
           +
Sbjct: 330 L 330


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 339 CRSWVAWFPSQSGS 380
           C+SW+ W+PS+  S
Sbjct: 459 CQSWLVWYPSEDAS 472


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 540 AMKEIYRAKKVYDGVSHAAKLYPN 469
           A+K++YR K  Y G++    + PN
Sbjct: 63  AIKKVYRTKDAYKGIAFPTAVSPN 86


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 164 APYSWAAFGIRWPSCSAKDNPRRRLRTPRK 75
           AP      G RWP+  A+D PR  + T R+
Sbjct: 208 APVLLKTDGGRWPTIWAEDTPRELVTTRRE 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,038
Number of Sequences: 5004
Number of extensions: 51794
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)