Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G08
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0274 - 17183141-17183689                                         28   6.0  
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755...    28   7.9  
02_02_0258 - 8374442-8375083                                           28   7.9  

>02_03_0274 - 17183141-17183689
          Length = 182

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -1

Query: 119 SAKDNPRRRLRTPRKSTSNHELSDTLTSRNQLTPT 15
           SA   PRRR   P      H  SD  T     TPT
Sbjct: 5   SASPRPRRRRMDPTAHLGRHHASDLATPHPPTTPT 39


>03_02_0650 +
           10174905-10175000,10175321-10175376,10175467-10175540,
           10176215-10176753,10176845-10177186,10177520-10177879,
           10177982-10178193,10178881-10179169,10179469-10180152
          Length = 883

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 624 VTWYLVFYTPFDVGYKVAKFLPVKVVAAAMKEIYRAKKV 508
           +TW L+FYTP   G  V + + V+ VA ++    RA KV
Sbjct: 222 ITWLLLFYTPNTKGQFVLESV-VEDVARSLDGALRAGKV 259


>02_02_0258 - 8374442-8375083
          Length = 213

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/49 (40%), Positives = 21/49 (42%)
 Frame = -1

Query: 209 FWASTIPSCHLRICSAPYSWAAFGIRWPSCSAKDNPRRRLRTPRKSTSN 63
           F     P   LR C AP   AA   RW  C      RRR R P  STS+
Sbjct: 62  FCGMLFPWSALRRCLAPLPSAA---RWLLCLPCRCARRRRRRPATSTSS 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,417,907
Number of Sequences: 37544
Number of extensions: 371046
Number of successful extensions: 1027
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)