Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G03
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367...    29   3.0  
07_03_0497 + 18777377-18777592,18777691-18778512                       29   3.9  
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504...    28   6.9  
04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781     28   6.9  
07_03_1606 + 28111158-28111328,28111431-28111549,28111984-281120...    28   9.1  
01_05_0720 - 24588623-24588658,24588888-24589196,24589449-245913...    28   9.1  

>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
            3675973-3676042,3676157-3676224
          Length = 1337

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
 Frame = +2

Query: 125  FLFSTYHKFLRVDCRCSLXRIASIRYLTPNKQTMRSTSESKISPSCIQPAVKASHTISPI 304
            FL + +HK   VD   ++      + LTP+ +++R           ++ +++  H I   
Sbjct: 992  FLVNGFHKSGDVDHSINMLDSCIAQGLTPSNRSLRVVLSHHCKLGNLEKSLELFHLIE-- 1049

Query: 305  VRNRWKK-LYTKNVLTKQELAF-QAPQASKILNKSNNRDTIM*DM*YTIIV 451
              N WK  L  +  L    L+  +  +A+  LN  N R+ I  D+ + +++
Sbjct: 1050 -SNGWKHGLVIETTLISSLLSSGRFSEATSCLNSMNKRELIGFDIHFDVLI 1099


>07_03_0497 + 18777377-18777592,18777691-18778512
          Length = 345

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 310 PYNRTYCVGGFNSWLDTTRTDFALRCA 230
           P N T CVG  + WL   RTD A   A
Sbjct: 5   PENSTVCVGSTDGWLALHRTDAATTAA 31


>06_01_0692 -
           5047162-5047441,5047602-5047726,5048257-5048327,
           5048453-5048834,5049389-5050126
          Length = 531

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 197 RYLTPNKQTMRSTSESKISPSCIQPAVKAS 286
           R + PNK T  + + ++  PSCI+P+ ++S
Sbjct: 14  RSMLPNKVTALNPNAAEFVPSCIRPSFESS 43


>04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781
          Length = 551

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -2

Query: 292 CVGGFNSWLDTTRTD--FALRCAPHCLLVRRQISDGSYS 182
           C GG   W+   ++D  FA+ C P+CL VR  ++DG+++
Sbjct: 232 CAGGAFYWVAHDKSDGTFAVEC-PNCL-VRFAMNDGTFT 268


>07_03_1606 +
           28111158-28111328,28111431-28111549,28111984-28112024,
           28112654-28112713,28112812-28112858,28112939-28113133,
           28113236-28113282,28113363-28113429,28113521-28113621,
           28113725-28113826,28113904-28114042,28114120-28114182,
           28114323-28114406,28114981-28115295
          Length = 516

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 358 FLFSEYILRV*FLPSVPYNRTYCVGGFNSW 269
           F+FSE +  +  LP + +N  +C+  F SW
Sbjct: 77  FVFSEDLFFIYLLPPIIFNAGFCLLEFYSW 106


>01_05_0720 -
           24588623-24588658,24588888-24589196,24589449-24591366,
           24591412-24591693,24592027-24592328
          Length = 948

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 473 SEPKIFSRFWKSRNLVSSL*PFTRLSANSNRLNANTATA 589
           S+P+  +  W++ NLVS +  F   S+N  + N    TA
Sbjct: 614 SDPENCAEIWRATNLVSKVIGFIACSSNEAQRNRRPITA 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,884,040
Number of Sequences: 37544
Number of extensions: 310818
Number of successful extensions: 762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)