Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G02
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16IR4 Cluster: Apolipoprotein D, putative; n=3; Endopt...    37   0.40 
UniRef50_UPI0000518524 Cluster: PREDICTED: similar to Apolipopro...    33   6.5  

>UniRef50_Q16IR4 Cluster: Apolipoprotein D, putative; n=3;
           Endopterygota|Rep: Apolipoprotein D, putative - Aedes
           aegypti (Yellowfever mosquito)
          Length = 279

 Score = 37.1 bits (82), Expect = 0.40
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
 Frame = -2

Query: 686 EYVVEAGKKVYHK-VXSSKEDLTEPPSNPYA-------VRPMDSDAEWLP 561
           EY V AGKK+YH+   S   +   P ++P +       V P + DAEWLP
Sbjct: 230 EYAVNAGKKIYHQYTDSGSTEQGSPTASPSSGHRVEKLVMPQNPDAEWLP 279


>UniRef50_UPI0000518524 Cluster: PREDICTED: similar to
           Apolipoprotein D precursor (Apo-D) (ApoD); n=2; Apis
           mellifera|Rep: PREDICTED: similar to Apolipoprotein D
           precursor (Apo-D) (ApoD) - Apis mellifera
          Length = 270

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -2

Query: 686 EYVVEAGKKVYHKVXSSKEDLTEPPSNPYAVRPM-----DSDAEWLP 561
           E+V   G KVYHK+  S+E +T  P        M      ++ EW+P
Sbjct: 224 EWVANMGSKVYHKLTGSEEKITSKPQETTEKNLMRHYEETNEVEWIP 270


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,734,435
Number of Sequences: 1657284
Number of extensions: 10487501
Number of successful extensions: 19158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19147
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)