Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G02
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   8.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 649 KWXAARRTLPNHLRTHTQSDLWTAMPSGYPKGLSG 545
           KW  A R LP+ LR     D    + S   KG +G
Sbjct: 551 KWERANRELPDDLRQKVLPDGTLVITSVQKKGDAG 585


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 649 KWXAARRTLPNHLRTHTQSDLWTAMPSGYPKGLSG 545
           KW  A R LP+ LR     D    + S   KG +G
Sbjct: 551 KWERANRELPDDLRQKVLPDGTLVITSVQKKGDAG 585


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 667 ERRCTTKWXAARRTLPNHLRT 605
           E RCT +    +R LP+ L T
Sbjct: 54  EGRCTAEGNELKRVLPDALAT 74


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 667 ERRCTTKWXAARRTLPNHLRT 605
           E RCT +    +R LP+ L T
Sbjct: 54  EGRCTAEGNELKRVLPDALAT 74


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 667 ERRCTTKWXAARRTLPNHLRT 605
           E RCT +    +R LP+ L T
Sbjct: 54  EGRCTAEGNELKRVLPDALAT 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,407
Number of Sequences: 438
Number of extensions: 3284
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)