Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F22
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|... 28 1.1
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.0
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 27 2.0
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 2.6
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 27 2.6
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.6
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 27 3.5
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 27 3.5
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 26 4.6
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 26 6.1
>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 622 IGIFENLLGHVNKLCEDNQEIDLGLTVNEKRDTQQLD 512
IG+F L+G + + DN DL + N+K+D LD
Sbjct: 159 IGMFLWLMGWLGNMYHDNILYDLRRSSNKKKDPDNLD 195
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -3
Query: 478 VSRDTFNMLLNCQTKKQAI-VCKHDINGIKDTPTLETFLHKEEIYRNENN 332
++RD FN LLN QTK +A + K DI + +T + +EE + E +
Sbjct: 116 INRD-FNSLLNSQTKPEATGLMKEDITPVVNTSKQSSTGTQEESSKPEKS 164
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 321 KDIALFSFLYISSLCKKVSNVGVSFIPLIS 410
K+IA+ SFL + C K+SNV V + +++
Sbjct: 614 KEIAVTSFLSSHAACSKLSNVRVLLLEILT 643
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +3
Query: 252 DVLRRLFNALFNDSHCIKLKWFVKDIALFSFLYISSLCKKVSNVGVSFIPLIS 410
DV RR+F F+ I +K+F + + + +Y+ K N+G +F +++
Sbjct: 30 DVRRRIFRPHFSQFWTIWMKFFSIALVIITQIYVG---YKTKNIGWNFFSVVT 79
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 370 FLHKEEIYRNENNAMSLTNHLSFMQWESLKRALNNL 263
F H+E + N+A +LSF WE LK+ NL
Sbjct: 62 FAHREFAFTLPNDAY--IRYLSFSNWEELKKEALNL 95
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 562 FLDYLHRVYLHD 597
F D++HRVYLHD
Sbjct: 630 FYDFVHRVYLHD 641
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 478 LPHHDQFWFHLYLTAEYLSFHLQLILNLFLDYLHRVYLHDQVNSQIY 618
LP + + T+ ++ F LI LFL ++ Y+ VN Q+Y
Sbjct: 363 LPTDKNIFTYSLKTSSFVPFAGNLITELFLCSDNKYYVRHLVNQQVY 409
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +3
Query: 282 FNDSHCIKLKWFVKDIALFSFLYISSLCKKVSNVGVSFIPLISCLQTIACFLVWQL 449
+N+ H L + I + + LCK N + ++CL C ++W++
Sbjct: 332 YNELHSAVLNMPLGAIEVAAMFISGVLCKVFKNGRLLIGVFMNCLTLAGCLMIWKI 387
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 613 FENLLGHVNKLCEDNQEIDLGLTVNE 536
F N +G V+ + ++NQE L LTV++
Sbjct: 580 FSNKIGVVHDISDENQEDHLNLTVHK 605
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 306 LKWFVKDIALFSFLYISS---LCKKVSNVGVSFIPLISCLQTIACFLVWQLSNML 461
L F+ A+ ++ Y SS + VSN V L+S ++ + C ++W + L
Sbjct: 215 LSAFIVFFAVLAYFYPSSSSWVSSNVSNRIVRIFFLLSAMKCLGCSVIWHTFSSL 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,715,808
Number of Sequences: 5004
Number of extensions: 53997
Number of successful extensions: 231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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