Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F22
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317...    33   0.30 
06_02_0096 - 11683368-11684581,11684705-11684773,11685356-116854...    30   2.1  
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258     29   2.8  
09_04_0266 + 16240162-16242075                                         28   8.4  
03_06_0195 + 32256771-32258792                                         28   8.4  

>04_04_0962 +
           29728983-29729034,29729622-29731369,29731656-29731742,
           29732035-29732199,29732437-29732526,29732863-29733027,
           29733124-29733418,29733550-29733764,29733879-29733947,
           29734107-29734184,29734466-29734529,29734658-29734897,
           29734985-29735124
          Length = 1135

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 478 LPHHDQFWFHLYLTAEYLSFHLQLILNLFLDY 573
           L +H + WFHL    E+LSF + L+ N    +
Sbjct: 821 LDNHSRPWFHLMAAVEWLSFRMNLLCNFVFGF 852


>06_02_0096 -
           11683368-11684581,11684705-11684773,11685356-11685412,
           11685553-11685609,11685758-11685817,11686770-11686893
          Length = 526

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = -3

Query: 685 RXEWSQKHGVEIDLSLDDDNDIGIFENLLGHVNKLCED-NQEIDLGLTVNEKRDTQQL-- 515
           R  W Q+    +D++  +D+ +G  + L GHV+   ED NQ     L ++  +D++ +  
Sbjct: 65  RARWQQQQ--TLDVAKLEDSVVGTSDELTGHVDANNEDSNQPNQQILAMSRSKDSRLINS 122

Query: 514 DIGETKIDH 488
           D+   K  H
Sbjct: 123 DVAAAKTSH 131


>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
          Length = 700

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 649 DLSLDDDNDIGIFENLLGHVNKLCEDNQEIDLGL-TVNEKRDTQQLDIGET 500
           D+S    N  G  +NL      LC+DN+ +D+GL T + K   Q  D+G T
Sbjct: 579 DVSSPRSNQNGTTDNLSCGGVPLCQDNKVLDVGLETGHCKVFMQSEDVGRT 629


>09_04_0266 + 16240162-16242075
          Length = 637

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 270 FNALFNDSHCIKLKWFVKDIALFSFLYIS 356
           FNA F ++H ++  W+V D  L   L IS
Sbjct: 549 FNAAFEEAHRVQSAWYVPDTQLREELRIS 577


>03_06_0195 + 32256771-32258792
          Length = 673

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -3

Query: 655 EIDLSLDDDNDIGIFENLLGHVNKLCEDNQEIDLGLTVNEKRDTQQLDIGETKID 491
           E DL  + D DI  F+   G    +CE+N + ++     E+ D ++ DIG + ++
Sbjct: 142 EEDLDDETDGDIECFDEEDG----ICEENPDDEIFDDEEEESDPEEEDIGSSDLE 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,052,061
Number of Sequences: 37544
Number of extensions: 292310
Number of successful extensions: 790
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)