Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F22
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.8  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.7  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 7   HVNITYRHDPGH 42
           HV I+Y HDP H
Sbjct: 369 HVAISYIHDPDH 380


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 184 QPSFSCIFLSRYFLFSFQCSCFLMYYAD 267
           QP+F C    +++L S  C C   Y AD
Sbjct: 229 QPTFLCKGDGKWYLPSGGCHCKPGYQAD 256


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 592 HDQVNSQIYQYHCHHLTISQSQHH 663
           H + +S +YQY C + T +    H
Sbjct: 35  HLKSHSNVYQYRCANCTYATKYCH 58


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 374 LQCWCIFYTINIM 412
           L CW  F+T NIM
Sbjct: 629 LICWLPFFTCNIM 641


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 323 FNKPFEFYAMGIIEKGIKQSA 261
           F+KPF++  + I+EK   +S+
Sbjct: 535 FSKPFKYQGITILEKKPSRSS 555


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = -1

Query: 45 VMPWIMSVC 19
          V+PW++S+C
Sbjct: 4  VVPWLLSIC 12


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,484
Number of Sequences: 438
Number of extensions: 3539
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)