Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F21
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...   149   3e-37
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    82   6e-17
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    29   0.77 
SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    26   4.1  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    26   5.5  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    25   7.2  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   9.5  

>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score =  149 bits (361), Expect = 3e-37
 Identities = 70/121 (57%), Positives = 85/121 (70%)
 Frame = -1

Query: 652 YLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMXG 473
           YLSPP S      DP+H L+YV F + +CA FSK WI+VSG+S +DVAKQLK QQ+VM G
Sbjct: 344 YLSPPASFQDALIDPIHTLVYVFFTMFACALFSKLWIEVSGASPRDVAKQLKSQQLVMAG 403

Query: 472 HRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIXVK 293
           HR+ SM  EL R IPTAA   G  +GAL+V +D LGA+GSGT +LL  T IY Y+E   K
Sbjct: 404 HREGSMYKELKRIIPTAAWLSGAVVGALAVASDLLGALGSGTAVLLCTTTIYGYYEQLQK 463

Query: 292 E 290
           E
Sbjct: 464 E 464


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 40/126 (31%), Positives = 67/126 (53%)
 Frame = -1

Query: 652 YLSPPESLAHIAHDPVHALLYVLFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMXG 473
           +L PP  L+     PVH ++Y + ++    +FS  W++ +    +DV    KE Q+V+ G
Sbjct: 348 FLYPPLGLSEALLHPVHTVIYTITLICITIYFSLLWMNATAGGPRDVLLFFKENQLVIAG 407

Query: 472 HRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIXVK 293
           +R+ +M+ EL + IP AA      +  LSV+A    A   G G+L+A  ++Y  FE+ V 
Sbjct: 408 YREATMLKELEKIIPIAAKLSAFFVSILSVIAGIF-ASTFGVGVLIASALVYASFEMIVG 466

Query: 292 EQAEMG 275
               +G
Sbjct: 467 ANTSLG 472


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 445 LNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIXVKEQ--AEMGG 272
           +N +I       G  IGA   +A  L      TGI++ + I+ ++F    +      MGG
Sbjct: 319 VNDHIEAFINISGSLIGAPKTVAALLSGEMKDTGIVITLNILEKFFSRSERAMMVRTMGG 378

Query: 271 MSTLL 257
           +S++L
Sbjct: 379 VSSML 383


>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 559 FSKTWID-VSGSSAKDVAKQLKEQQMVMXGHRDNSMIHELNRY 434
           +S T ID + G  +K++A  L   +     +RD  ++H LN +
Sbjct: 350 YSSTEIDLIKGKRSKEIASILGYNETEYVAYRDYLVVHGLNSH 392


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 558 KKAQEPSMXSTXSRACTGSCAMCARDS 638
           KK Q+ ++ S  +  CT  C  CA+ S
Sbjct: 54  KKVQQCTLLSIKTGGCTEDCKYCAQSS 80


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 357 PMAPRKSASTDRAPMHSPPNAAAVGM*RFSSWI 455
           PMA RK A T R    +     + G+ R SSW+
Sbjct: 102 PMATRKIAGTYRDAPDNSMQQTSTGVHRSSSWL 134


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 539 CVWLLSQRCGETTEGTADGDARSPRQLHDPRTEPLHPDG 423
           C  +L++    TT  T D +AR  RQL +  +EP+   G
Sbjct: 54  CTKVLNELEEITTHTTYDSNARVLRQLCEHASEPVDETG 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,130
Number of Sequences: 5004
Number of extensions: 40307
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)