Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F19
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    31   0.012
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.5  

>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 283 KVSGVPQNVIILSKN*RQTHKSNVSQVSGKY*FMRKLIIHFRDVLITG 140
           K+S +P NV ++    R+  K  V  VS    F+RK   HF +  +TG
Sbjct: 54  KLSKIPNNVNLMDVVAREFDKIQVGDVSSVLKFIRKYGSHFIESYVTG 101


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 11  LQIHHTT*SPVYLHQISHSVPFLNF 85
           L +H+    PVY H  +   P+ NF
Sbjct: 158 LPLHYPPPPPVYTHHYARYHPYPNF 182


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 635 SPTQSSGPSSFTAAPAPLSVPVTAP 561
           +P  SSG +S  AAP P +    +P
Sbjct: 20  TPISSSGMTSPAAAPPPATTSSGSP 44


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 568 VTGTESGAGAAVNDDGPEDCVGDTSVGND 654
           V GT     A V D G   CV + SVG +
Sbjct: 288 VAGTLIIREAKVEDSGKYLCVVNNSVGGE 316


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,168
Number of Sequences: 336
Number of extensions: 3177
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)