Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F19
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    28   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.5  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   4.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.9  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.9  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   7.8  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   7.8  

>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 638 VSPTQSSGPSSFTAAPAPLSVPVTAPRHPPTPFQVFF 528
           +S   S  PS+ +  PAP+S   T  R+P T  Q  F
Sbjct: 178 LSVAASPNPSTPSNGPAPVSTTATPSRNPVTRLQRIF 214


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 638  VSPTQSSGPSSFTAAPAPLSVPVTAPRHPPTP 543
            V+P Q   P   T APAP S P      PP P
Sbjct: 1455 VAPVQPKAPGMVTNAPAPSSAPA-----PPAP 1481


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 525 PLHDRTQLSYTHNLNTRSLHIHTHSDILLNFKTP 424
           P H + +LS T +   +   + +  DI L+FK P
Sbjct: 342 PRHTKPKLSTTQSTPVKPASLQSEEDIQLSFKQP 375


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 644 TEVSPTQSSGPSSFTAAPAPLSVPVTAPRHPPTP 543
           +E+ P  S+ P      P+P S P    + PP P
Sbjct: 135 SELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 316 INIVVYTFPYRKVSGVPQNVIILSKN*RQTHKS 218
           IN+    F Y  +SG+  N  +LSK+ R  + +
Sbjct: 745 INVYKIHFQYNNISGLADNYTLLSKHDRAMYNN 777


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 638 VSPTQSSGPSSFTAAPAPLSVPVTAPRHPPTPFQVFFIL 522
           V+P  ++ P+ ++  PA  ++P+     P  P   +F L
Sbjct: 147 VNPNSNNSPTFYSNPPALSNIPIPLNNSPYRPEDAYFQL 185


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 340 TLS*NIKCINIVVY--TFPYRKVSGVPQNVIILSKN 239
           TLS ++KC+N V Y    PY+  S    N + +  N
Sbjct: 465 TLSGHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSN 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,336
Number of Sequences: 5004
Number of extensions: 47862
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)