Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F18
         (347 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   0.89 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    20   8.3  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 0.89
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 3   CDGTFNTKKQMEAHIYKEHGAEAPRHRTITE 95
           CD  F++ K++  H+ K    +    R+ITE
Sbjct: 553 CDQAFSSLKELSNHMVKNSHYKEHIMRSITE 583


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 80  PHHYRVQHQWLPMVK*CVT 136
           P+   + H W+P+++ CV+
Sbjct: 469 PYDSLLWHTWMPVMRICVS 487


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 28  NKWKPIFTKN 57
           NK KPI+T+N
Sbjct: 280 NKTKPIWTRN 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,674
Number of Sequences: 336
Number of extensions: 1153
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)