Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F18
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0207 + 27534226-27534723                                         27   3.1  
01_02_0101 + 11127762-11128146,11128604-11128782,11129285-111293...    27   4.0  
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242...    27   5.3  
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224...    27   5.3  
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556...    26   7.1  
11_06_0066 - 19741883-19742263,19743001-19743231,19743378-197435...    26   9.3  
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717           26   9.3  
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168...    26   9.3  
03_04_0049 - 16814121-16814515,16815659-16815788,16815905-168159...    26   9.3  

>01_06_0207 + 27534226-27534723
          Length = 165

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 6   DGTFNTKKQMEAHIYKEHGAEAPRHRTITEYNTNG 110
           DGT  TKK  +    ++ G   PR   + EYN NG
Sbjct: 96  DGTTTTKKASKGSYRRQEGGRNPR---MHEYNKNG 127


>01_02_0101 +
           11127762-11128146,11128604-11128782,11129285-11129341,
           11129421-11129484,11130374-11130417,11130811-11130861
          Length = 259

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 20  YKKTNGSPYLQRTWRGSPPXPHHYRVQ 100
           Y  T+   +L+  WR SPP PH   VQ
Sbjct: 11  YAVTHFLLFLRSRWRWSPPPPHVLPVQ 37


>02_05_0473 +
           29319824-29322511,29322659-29322820,29324133-29324249,
           29324360-29324469,29324504-29324540,29324696-29324862,
           29325002-29325089,29325163-29325270
          Length = 1158

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 3   CDGTFNTKKQMEAHIYKEHGAEAPRHRTI 89
           C  +F  ++ +E H+ ++HGA+  ++ T+
Sbjct: 502 CMDSFTNRRVLERHVQEKHGAQYLQYSTL 530


>01_05_0484 -
           22621614-22621676,22621798-22621911,22622006-22622453,
           22623052-22623179,22623747-22623821,22623954-22624040
          Length = 304

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 22  QKNKWKPIFTKNMARKPPXTAPLQSTTPMAADGKVMCDLVE 144
           QK KWK I TK +   P     L+    +     + C L E
Sbjct: 232 QKIKWKKIITKVLQTNPDGVLKLKKLQKLVTKELLECGLTE 272


>04_04_1107 -
           30954647-30954769,30955052-30955141,30955309-30955617,
           30955732-30955842,30955945-30956379,30956452-30956610,
           30957044-30957994,30959016-30959483
          Length = 881

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 230 HRQLKSTIRRHH*LRSPYITFRCRL 304
           HR  +S I RHH +RS  I  +C +
Sbjct: 153 HRPEQSQIERHHPIRSEQIPAQCSI 177


>11_06_0066 -
           19741883-19742263,19743001-19743231,19743378-19743530,
           19743667-19743726,19743806-19743874,19744639-19744719,
           19744818-19744920,19745392-19745534,19745621-19745683,
           19745803-19745870,19745974-19746055,19746147-19746260,
           19746362-19746570,19746647-19746818
          Length = 642

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 207 YFSGFNDAIVNSSQRYADIISCGPRTLHF 293
           Y SG  + IVNS+++   ++  G    HF
Sbjct: 169 YVSGLREEIVNSAEQVFKLLELGEANRHF 197


>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
          Length = 415

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -1

Query: 158 CCKAASTKSHITLPSAAIGVVLCNGAVXGGFRAMFFVNMGFH 33
           C  A      + LP AA   V   G   GGF   + ++  FH
Sbjct: 15  CAAADWGGCFLALPPAAAAAVPSGGDTDGGFNLAWTLHQSFH 56


>03_05_0761 -
           27515441-27515650,27515967-27516074,27516666-27516839,
           27517185-27517469,27517688-27517920,27519422-27520139
          Length = 575

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 38  SPYLQRTWRGSPPXPHHYRVQHQWLPMVK*CVTW 139
           +P L+  W G P    + R + QW P ++ C  W
Sbjct: 199 NPRLRGDWSGRPVIEQNTRFRGQWGPALR-CEGW 231


>03_04_0049 -
           16814121-16814515,16815659-16815788,16815905-16815963,
           16816610-16817102
          Length = 358

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 198 MSQYFSGFNDAIVNSSQRYADIISCGPRTLHFVA 299
           +S YF  +NDA +    ++A  +  G   +HF+A
Sbjct: 76  VSPYFMRWNDAFLALGTQFAGGVFLGTAMMHFLA 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,167,257
Number of Sequences: 37544
Number of extensions: 125373
Number of successful extensions: 366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)