Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F18
         (347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   1.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   7.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   7.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   9.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   9.6  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 10  VHLIQKNKWKPIFTKNMARKPP 75
           V +I    W+PIF +N A   P
Sbjct: 139 VGVIDFESWRPIFRQNWASLQP 160


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 252 YADIISCGPRTLH 290
           + +I+SC P+T+H
Sbjct: 358 FCNIVSCSPQTVH 370


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 88   LQSTTPMAADGKVMCDLVEAAL 153
            + ST P  AD KVM  L+ A +
Sbjct: 1601 IASTVPFYADVKVMLPLIVATV 1622


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 88   LQSTTPMAADGKVMCDLVEAAL 153
            + ST P  AD KVM  L+ A +
Sbjct: 1597 IASTVPFYADVKVMLPLIVATV 1618


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 229 ASLKPLKYWDI 197
           A +KPL+ WD+
Sbjct: 139 AVIKPLQLWDV 149


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 68  SPPXPHHYRVQH 103
           S P PHH+ + H
Sbjct: 410 STPGPHHHTMGH 421


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 148 QLQPSHTSLYHRQ 110
           Q QP H  L+H Q
Sbjct: 806 QSQPPHQQLHHHQ 818


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 80  PHHYRVQHQWLPM 118
           P+H   QH+W  M
Sbjct: 120 PNHTSDQHKWFQM 132


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 136 SHTSLYHRQ 110
           +H S+YHRQ
Sbjct: 50  NHKSIYHRQ 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,821
Number of Sequences: 438
Number of extensions: 1479
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)