Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F17
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical pr... 75 5e-14
AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein. 75 5e-14
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 34 0.070
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 34 0.070
U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical p... 30 1.1
U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical pr... 30 1.1
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 2.6
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 2.6
Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical pr... 28 4.6
U23179-5|AAK68210.2| 347|Caenorhabditis elegans Serpentine rece... 28 6.1
AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical... 28 6.1
AL023847-8|CAI46616.1| 262|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical
protein C01F6.9 protein.
Length = 73
Score = 74.5 bits (175), Expect = 5e-14
Identities = 39/74 (52%), Positives = 42/74 (56%)
Frame = -3
Query: 229 MARGHQKIXXXXXXXXXXXXXXXXQGHSATDQKKAAQKALVHVCVVCKAQMPDPKTYKQH 50
MARG QKI + DQK AA KAL H C VC A MPDPKTYKQH
Sbjct: 1 MARGQQKIQSQQKNQKKADAARK----AGIDQKAAAAKALNHKCTVCLAMMPDPKTYKQH 56
Query: 49 FENKHPKNXRPDDL 8
FENKHPK+ P +L
Sbjct: 57 FENKHPKSPLPAEL 70
>AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein.
Length = 73
Score = 74.5 bits (175), Expect = 5e-14
Identities = 39/74 (52%), Positives = 42/74 (56%)
Frame = -3
Query: 229 MARGHQKIXXXXXXXXXXXXXXXXQGHSATDQKKAAQKALVHVCVVCKAQMPDPKTYKQH 50
MARG QKI + DQK AA KAL H C VC A MPDPKTYKQH
Sbjct: 1 MARGQQKIQSQQKNQKKADAARK----AGIDQKAAAAKALNHKCTVCLAMMPDPKTYKQH 56
Query: 49 FENKHPKNXRPDDL 8
FENKHPK+ P +L
Sbjct: 57 FENKHPKSPLPAEL 70
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 34.3 bits (75), Expect = 0.070
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 106 HVCVVCKAQMPDPKTYKQHFENKH 35
HVCV+C QMP T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359
Score = 33.9 bits (74), Expect = 0.093
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -3
Query: 106 HVCVVCKAQMPDPKTYKQHFENKH 35
H+C++C ++P+ +T ++H +NKH
Sbjct: 39 HMCLLCNRRIPENETLREHMKNKH 62
Score = 30.7 bits (66), Expect = 0.86
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -3
Query: 106 HVCVVCKAQMPDPKTYKQHFENKH 35
H C++C Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 34.3 bits (75), Expect = 0.070
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 106 HVCVVCKAQMPDPKTYKQHFENKH 35
HVCV+C QMP T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359
Score = 33.9 bits (74), Expect = 0.093
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -3
Query: 106 HVCVVCKAQMPDPKTYKQHFENKH 35
H+C++C ++P+ +T ++H +NKH
Sbjct: 39 HMCLLCNRRIPENETLREHMKNKH 62
Score = 30.7 bits (66), Expect = 0.86
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -3
Query: 106 HVCVVCKAQMPDPKTYKQHFENKH 35
H C++C Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229
>U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical
protein K10B3.1a protein.
Length = 73
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = -3
Query: 229 MARGHQKIXXXXXXXXXXXXXXXXQGHSATDQKKAAQKALVHVCVVC 89
MARGHQK G +DQK AA +L H C VC
Sbjct: 1 MARGHQKALSQQRNAEKTAKAKKAVG---SDQKNAAMASLHHKCTVC 44
>U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical
protein C09F5.3 protein.
Length = 359
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 106 HVCVVCKAQMPDPKTYKQHFENKHPK 29
H+C +C + P P+ HF H K
Sbjct: 183 HICSICDSAFPSPQAQSVHFAEAHKK 208
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 233 HNGSRTPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKG-TC 108
H+G +PE + + GK ++E T +P ESCT+G TC
Sbjct: 759 HDGCVSPEEAARRKARGK-ARHEATTARLYSKPGESCTQGQTC 800
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 233 HNGSRTPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKG-TC 108
H+G +PE + + GK ++E T +P ESCT+G TC
Sbjct: 856 HDGCVSPEEAARRKARGK-ARHEATTARLYSKPGESCTQGQTC 897
>Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical
protein F47H4.1 protein.
Length = 250
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 151 HSAT-DQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKH 35
HSA+ ++ + + H C++C+ + +T ++H N+H
Sbjct: 36 HSASLNRHRQLMHSNEHTCMMCERALNQKETIREHMRNEH 75
>U23179-5|AAK68210.2| 347|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 2 protein.
Length = 347
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 14 IWSXVLRVFVLKMLFVSLRVRHLGLTNHTNMDKCLLCSF 130
+W+ V+ + + L++ L R L L H N+ L+C F
Sbjct: 30 LWTFVVSILAIPALYIFLMKRILPLPFHGNIKFLLVCYF 68
>AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical
protein Y39B6A.27 protein.
Length = 473
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 36 CLFSKCCL*VLGSGIWALQTTQTWTSAFCAAFFWSVALCPCCFF 167
C S CC+ + S I AL + +F A + C CFF
Sbjct: 368 CGMSDCCINSVRSVICALVMPSRRSQSFAVARMYHAFACTICFF 411
>AL023847-8|CAI46616.1| 262|Caenorhabditis elegans Hypothetical
protein Y57A10C.11 protein.
Length = 262
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 51 CCL*VLGSG-IWALQTTQTWTSAFCAAFFWSVALCPCCFFILDI 179
CCL +GSG +W + + W F+W L P L+I
Sbjct: 55 CCL--VGSGWMWVVDNKRKWYIRSIRRFYWHRILMPTAVVCLNI 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,205
Number of Sequences: 27780
Number of extensions: 260096
Number of successful extensions: 729
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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