Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F15
(637 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D56583 Cluster: PREDICTED: similar to CG10122-PA... 166 3e-40
UniRef50_UPI00015B5184 Cluster: PREDICTED: similar to DNA-direct... 153 3e-36
UniRef50_UPI0000DB7146 Cluster: PREDICTED: similar to RNA polyme... 153 4e-36
UniRef50_P91875 Cluster: DNA-directed RNA polymerase I subunit R... 146 3e-34
UniRef50_Q16K29 Cluster: DNA-directed RNA polymerase; n=1; Aedes... 144 1e-33
UniRef50_UPI0000ECC670 Cluster: DNA-directed RNA polymerase I la... 140 3e-32
UniRef50_UPI0000F1FC15 Cluster: PREDICTED: similar to polymerase... 134 2e-30
UniRef50_O95602 Cluster: DNA-directed RNA polymerase I subunit R... 132 7e-30
UniRef50_A7S9W9 Cluster: Predicted protein; n=1; Nematostella ve... 121 1e-26
UniRef50_O17628 Cluster: DNA-directed RNA polymerase; n=3; Caeno... 116 4e-25
UniRef50_P15398 Cluster: DNA-directed RNA polymerase I subunit R... 114 1e-24
UniRef50_Q5KIF6 Cluster: DNA-directed RNA polymerase; n=1; Filob... 113 4e-24
UniRef50_UPI00004998AA Cluster: DNA-directed RNA polymerase I la... 111 1e-23
UniRef50_Q23DD6 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 111 1e-23
UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2; Ostre... 111 2e-23
UniRef50_Q7RWI3 Cluster: DNA-directed RNA polymerase; n=4; Peziz... 109 4e-23
UniRef50_UPI0000E46841 Cluster: PREDICTED: similar to RNA polyme... 109 5e-23
UniRef50_A4RCX8 Cluster: DNA-directed RNA polymerase; n=3; Sorda... 109 7e-23
UniRef50_Q8SS15 Cluster: DNA-directed RNA polymerase; n=1; Encep... 105 1e-21
UniRef50_A7ARZ5 Cluster: DNA directed RNA polymerase; n=1; Babes... 103 5e-21
UniRef50_Q4UI00 Cluster: DNA-directed RNA polymerase; n=2; Theil... 102 6e-21
UniRef50_A7PWB4 Cluster: Chromosome chr8 scaffold_34, whole geno... 102 8e-21
UniRef50_P10964 Cluster: DNA-directed RNA polymerase I subunit R... 101 1e-20
UniRef50_A1CP71 Cluster: DNA-directed RNA polymerase; n=8; Eurot... 100 3e-20
UniRef50_Q553A1 Cluster: DNA-directed RNA polymerase; n=2; Dicty... 100 3e-20
UniRef50_Q6C1S4 Cluster: DNA-directed RNA polymerase; n=1; Yarro... 100 3e-20
UniRef50_Q69X40 Cluster: DNA-directed RNA polymerase; n=6; Oryza... 99 8e-20
UniRef50_Q4PB85 Cluster: DNA-directed RNA polymerase; n=1; Ustil... 99 1e-19
UniRef50_Q9SVY0 Cluster: DNA-directed RNA polymerase I 190K chai... 97 3e-19
UniRef50_Q5CFH2 Cluster: RNA polymerase A/beta'/A'' subunit; n=1... 97 4e-19
UniRef50_A0DJB3 Cluster: DNA-directed RNA polymerase; n=2; Oligo... 97 4e-19
UniRef50_A6R8S3 Cluster: DNA-directed RNA polymerase; n=1; Ajell... 95 1e-18
UniRef50_A5KB21 Cluster: DNA-directed RNA polymerase; n=1; Plasm... 86 6e-16
UniRef50_Q7RJK4 Cluster: DNA-directed RNA polymerase; n=13; Euka... 84 2e-15
UniRef50_Q7R0K2 Cluster: DNA-directed RNA polymerase; n=1; Giard... 84 3e-15
UniRef50_Q26008 Cluster: DNA-directed RNA polymerase; n=2; Plasm... 82 1e-14
UniRef50_Q01DV6 Cluster: DNA-directed RNA polymerase; n=15; Euka... 80 4e-14
UniRef50_UPI000049A544 Cluster: DNA-directed RNA polymerase III ... 79 9e-14
UniRef50_Q3SE61 Cluster: DNA-directed RNA polymerase; n=2; Param... 77 3e-13
UniRef50_Q7YYV9 Cluster: DNA-directed RNA polymerase; n=3; Crypt... 77 5e-13
UniRef50_Q4U940 Cluster: DNA-directed RNA polymerase III largest... 77 5e-13
UniRef50_P16355 Cluster: DNA-directed RNA polymerase I subunit R... 77 5e-13
UniRef50_UPI00006CF1E9 Cluster: RNA polymerase Rpb1, domain 2 fa... 75 1e-12
UniRef50_P04051 Cluster: DNA-directed RNA polymerase III subunit... 75 1e-12
UniRef50_Q4A369 Cluster: DNA-directed RNA polymerase; n=1; Emili... 75 1e-12
UniRef50_Q9AW39 Cluster: DNA-directed RNA polymerase; n=1; Guill... 75 2e-12
UniRef50_Q74MX8 Cluster: NEQ427; n=1; Nanoarchaeum equitans|Rep:... 75 2e-12
UniRef50_A3AV59 Cluster: DNA-directed RNA polymerase; n=1; Oryza... 73 4e-12
UniRef50_A5K7P4 Cluster: DNA-directed RNA polymerase; n=13; Euka... 73 4e-12
UniRef50_Q9BMP2 Cluster: DNA-directed RNA polymerase; n=2; Stylo... 73 6e-12
UniRef50_A7AWJ0 Cluster: DNA-directed RNA polymerase II largest ... 73 6e-12
UniRef50_A7AP17 Cluster: RNA polymerase Rpb1, domain containing ... 73 6e-12
UniRef50_Q4QEN2 Cluster: DNA-directed RNA polymerase I largest s... 73 8e-12
UniRef50_Q4D133 Cluster: DNA-directed RNA polymerase; n=7; Trypa... 73 8e-12
UniRef50_Q54ZZ2 Cluster: DNA-directed RNA polymerase; n=2; Dicty... 72 1e-11
UniRef50_O77165 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 72 1e-11
UniRef50_Q8SRM3 Cluster: DNA-directed RNA polymerase; n=1; Encep... 72 1e-11
UniRef50_P14248 Cluster: DNA-directed RNA polymerase II subunit ... 72 1e-11
UniRef50_Q22M85 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 72 1e-11
UniRef50_Q7RXJ6 Cluster: DNA-directed RNA polymerase; n=4; root|... 72 1e-11
UniRef50_O14802 Cluster: DNA-directed RNA polymerase III subunit... 71 2e-11
UniRef50_Q4N0F9 Cluster: DNA-directed RNA polymerase II largest ... 71 3e-11
UniRef50_P17545 Cluster: DNA-directed RNA polymerase II subunit ... 71 3e-11
UniRef50_Q9LVH0 Cluster: DNA-directed RNA polymerase; n=11; Euph... 70 5e-11
UniRef50_P08968 Cluster: DNA-directed RNA polymerase III subunit... 70 5e-11
UniRef50_Q3SE62 Cluster: DNA-directed RNA polymerase; n=3; Param... 69 7e-11
UniRef50_O94666 Cluster: DNA-directed RNA polymerase III subunit... 69 7e-11
UniRef50_A1RWW4 Cluster: DNA-directed RNA polymerase, subunit A'... 69 9e-11
UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit ... 69 9e-11
UniRef50_Q010D7 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 68 2e-10
UniRef50_Q8MX30 Cluster: DNA-directed RNA polymerase; n=1; Naegl... 68 2e-10
UniRef50_Q5CUJ2 Cluster: DNA-directed RNA polymerase; n=3; Eukar... 68 2e-10
UniRef50_P15354 Cluster: DNA-directed RNA polymerase subunit A''... 68 2e-10
UniRef50_Q98RN1 Cluster: DNA-directed RNA polymerase; n=1; Guill... 68 2e-10
UniRef50_Q4SF83 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 67 4e-10
UniRef50_A6SCV1 Cluster: DNA-directed RNA polymerase; n=19; Fung... 66 5e-10
UniRef50_Q9AVW8 Cluster: DNA-directed RNA polymerase II largest ... 66 7e-10
UniRef50_A3BPR9 Cluster: DNA-directed RNA polymerase; n=7; Magno... 66 7e-10
UniRef50_Q8SSC4 Cluster: DNA-directed RNA polymerase II subunit ... 66 9e-10
UniRef50_Q7T6X5 Cluster: DNA-directed RNA polymerase subunit 1; ... 65 1e-09
UniRef50_Q9AXN0 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 65 2e-09
UniRef50_Q8PUR2 Cluster: DNA-directed RNA polymerase subunit A''... 65 2e-09
UniRef50_O28390 Cluster: DNA-directed RNA polymerase subunit A''... 65 2e-09
UniRef50_A5K7T9 Cluster: DNA-directed RNA polymerase; n=1; Plasm... 64 2e-09
UniRef50_A2DEX5 Cluster: DNA-directed RNA polymerase; n=1; Trich... 64 2e-09
UniRef50_Q0V3B7 Cluster: DNA-directed RNA polymerase; n=2; Ascom... 64 2e-09
UniRef50_P04050 Cluster: DNA-directed RNA polymerase II subunit ... 64 2e-09
UniRef50_Q18EX7 Cluster: DNA-directed RNA polymerase subunit A''... 64 3e-09
UniRef50_Q8ZYQ7 Cluster: DNA-directed RNA polymerase subunit A''... 64 3e-09
UniRef50_Q58446 Cluster: DNA-directed RNA polymerase subunit A''... 64 3e-09
UniRef50_A5DCV3 Cluster: DNA-directed RNA polymerase II subunit ... 64 4e-09
UniRef50_Q7RQQ6 Cluster: DNA-directed RNA polymerase; n=9; Plasm... 63 5e-09
UniRef50_Q8TXI9 Cluster: DNA-directed RNA polymerase largest sub... 63 6e-09
UniRef50_Q9VXP9 Cluster: DNA-directed RNA polymerase; n=4; Dipte... 62 8e-09
UniRef50_Q9YAU2 Cluster: DNA-directed RNA polymerase subunit A''... 62 8e-09
UniRef50_Q84KP6 Cluster: DNA-directed RNA polymerase; n=3; Eukar... 62 1e-08
UniRef50_P29158 Cluster: DNA-directed RNA polymerase subunit A''... 62 1e-08
UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit... 62 1e-08
UniRef50_Q03586 Cluster: DNA-directed RNA polymerase subunit A''... 61 2e-08
UniRef50_Q3LWE3 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 61 3e-08
UniRef50_Q27095 Cluster: DNA-directed RNA polymerase; n=2; Trich... 60 3e-08
UniRef50_Q5C3D2 Cluster: SJCHGC05045 protein; n=1; Schistosoma j... 59 8e-08
UniRef50_O96452 Cluster: DNA-directed RNA polymerase; n=1; Anton... 58 1e-07
UniRef50_O27126 Cluster: DNA-directed RNA polymerase subunit A''... 58 2e-07
UniRef50_P25202 Cluster: DNA-directed RNA polymerase III subunit... 58 2e-07
UniRef50_Q196X0 Cluster: DNA-directed RNA polymerase; n=1; Aedes... 57 3e-07
UniRef50_Q91FI1 Cluster: 343L; n=1; Invertebrate iridescent viru... 56 5e-07
UniRef50_Q1L5Y1 Cluster: DNA-directed RNA polymerase; n=1; Cerat... 56 5e-07
UniRef50_Q7Z755 Cluster: POLR3A protein; n=5; Metazoa|Rep: POLR3... 54 2e-06
UniRef50_A6SJ73 Cluster: DNA-directed RNA polymerase; n=2; Scler... 54 2e-06
UniRef50_A4GI99 Cluster: RpoA2 RNA polymerase subunit A''; n=1; ... 54 3e-06
UniRef50_A5ATH2 Cluster: Putative uncharacterized protein; n=1; ... 54 4e-06
UniRef50_Q23692 Cluster: RNA polymerase II, large subunit; n=1; ... 52 1e-05
UniRef50_Q83066 Cluster: DNA-directed RNA polymerase; n=3; Lymph... 52 2e-05
UniRef50_Q6IUR3 Cluster: DNA-directed RNA polymerase; n=3; Entam... 51 2e-05
UniRef50_Q2N0X2 Cluster: RNA polymerase III large subunit; n=1; ... 50 6e-05
UniRef50_Q8MUU2 Cluster: DNA-directed RNA polymerase; n=4; Giard... 49 1e-04
UniRef50_Q06VH1 Cluster: RNA polymerase II; n=1; Trichoplusia ni... 47 3e-04
UniRef50_Q9LQ02 Cluster: DNA-directed RNA polymerase; n=1; Arabi... 47 4e-04
UniRef50_Q5YF58 Cluster: DNA-directed RNA polymerase; n=6; Irido... 46 8e-04
UniRef50_Q1L5X6 Cluster: DNA-directed RNA polymerase; n=2; lamii... 46 8e-04
UniRef50_A7QKE4 Cluster: Chromosome chr2 scaffold_112, whole gen... 45 0.002
UniRef50_Q5DD92 Cluster: SJCHGC09439 protein; n=1; Schistosoma j... 43 0.007
UniRef50_Q01JX0 Cluster: DNA-directed RNA polymerase; n=5; Oryza... 41 0.022
UniRef50_Q20EX3 Cluster: DNA-directed RNA polymerase; n=1; Oltma... 30 0.023
UniRef50_Q6YHB9 Cluster: DNA-directed RNA polymerase; n=5; Ranav... 40 0.038
UniRef50_P48120 Cluster: DNA-directed RNA polymerase subunit bet... 28 0.33
UniRef50_A5BZZ3 Cluster: DNA-directed RNA polymerase; n=1; Vitis... 37 0.47
UniRef50_O78483 Cluster: DNA-directed RNA polymerase subunit bet... 31 0.56
UniRef50_Q9CK92 Cluster: DNA-directed RNA polymerase subunit bet... 36 0.62
UniRef50_Q39KH4 Cluster: DNA-directed RNA polymerase subunit bet... 36 0.62
UniRef50_Q7VRP8 Cluster: DNA-directed RNA polymerase subunit bet... 36 0.62
UniRef50_UPI0000F1D3E9 Cluster: PREDICTED: similar to Sperm asso... 36 0.82
UniRef50_Q8G515 Cluster: DNA-directed RNA polymerase subunit bet... 36 0.82
UniRef50_Q9PQV5 Cluster: DNA-directed RNA polymerase subunit bet... 36 1.1
UniRef50_Q82DQ4 Cluster: DNA-directed RNA polymerase subunit bet... 36 1.1
UniRef50_Q6F0L8 Cluster: DNA-directed RNA polymerase subunit bet... 36 1.1
UniRef50_Q7VKL8 Cluster: DNA-directed RNA polymerase subunit bet... 35 1.4
UniRef50_Q1ACN4 Cluster: DNA-directed RNA polymerase subunit bet... 29 1.6
UniRef50_Q1L5X9 Cluster: DNA-directed RNA polymerase; n=1; March... 34 2.5
UniRef50_A5Z8Z4 Cluster: DNA-directed RNA polymerase; n=2; Bacte... 34 3.3
UniRef50_A6YGE2 Cluster: DNA-directed RNA polymerase; n=1; Lepto... 34 3.3
UniRef50_Q4UCH6 Cluster: Putative uncharacterized protein; n=2; ... 33 5.8
UniRef50_O67763 Cluster: DNA-directed RNA polymerase subunit bet... 33 5.8
UniRef50_Q7PCJ6 Cluster: DNA-directed RNA polymerase subunit bet... 33 5.8
UniRef50_P60289 Cluster: DNA-directed RNA polymerase subunit bet... 33 5.8
UniRef50_Q0LJX1 Cluster: DNA-directed RNA polymerase, subunit be... 33 7.6
UniRef50_A1HGA7 Cluster: DNA repair exonuclease-like protein; n=... 33 7.6
UniRef50_Q1KVX8 Cluster: DNA-directed RNA polymerase; n=1; Scene... 33 7.6
UniRef50_Q7VJ82 Cluster: Bifunctional DNA-directed RNA polymeras... 33 7.6
>UniRef50_UPI0000D56583 Cluster: PREDICTED: similar to CG10122-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG10122-PA - Tribolium castaneum
Length = 1619
Score = 166 bits (404), Expect = 3e-40
Identities = 74/107 (69%), Positives = 93/107 (86%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A K+I+KE+Q+VFNVYGI VDPRHL+LIADYMT+NG FEP+SRKGME+S+SPLQ
Sbjct: 1511 TYGIEAAMKIIVKEVQDVFNVYGIKVDPRHLSLIADYMTFNGTFEPLSRKGMESSASPLQ 1570
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 315
QM+FESSL FL++A + K+D+L + SSCLMVG+ C TGTG F++ H
Sbjct: 1571 QMTFESSLTFLRNATIGGKRDNLTNPSSCLMVGKPCVTGTGCFEVLH 1617
>UniRef50_UPI00015B5184 Cluster: PREDICTED: similar to DNA-directed
RNA polymerase I largest subunit; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to DNA-directed RNA
polymerase I largest subunit - Nasonia vitripennis
Length = 1694
Score = 153 bits (372), Expect = 3e-36
Identities = 72/105 (68%), Positives = 87/105 (82%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE AN+VI+KE+++VF +YGITVD RHL+LIADYMT+ G F+P+SRKGME S+SPLQ
Sbjct: 1570 TYGIEAANRVIVKEVKDVFKMYGITVDTRHLSLIADYMTFEGRFQPLSRKGMEDSASPLQ 1629
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
QMSFESSL FLK+A L K DDL S SS LM+G+ C +GTG F L
Sbjct: 1630 QMSFESSLNFLKNATLQGKNDDLTSPSSRLMLGQPCNSGTGAFSL 1674
>UniRef50_UPI0000DB7146 Cluster: PREDICTED: similar to RNA polymerase
I subunit CG10122-PA; n=1; Apis mellifera|Rep: PREDICTED:
similar to RNA polymerase I subunit CG10122-PA - Apis
mellifera
Length = 1665
Score = 153 bits (370), Expect = 4e-36
Identities = 71/105 (67%), Positives = 90/105 (85%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE AN+VIIKE+++VF +YGITVD RHL+LIADYMT++G F+P+SRKGME S+SPLQ
Sbjct: 1547 TYGIEAANRVIIKEVRDVFKMYGITVDSRHLSLIADYMTFDGRFQPLSRKGMEESASPLQ 1606
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
QMSFESSL FLK+A L K+D+L S SS LM+G+ C++GTG+ L
Sbjct: 1607 QMSFESSLNFLKNAALQGKRDNLESPSSRLMLGQPCKSGTGICSL 1651
>UniRef50_P91875 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=3; Sophophora|Rep: DNA-directed RNA polymerase I
subunit RPA1 - Drosophila melanogaster (Fruit fly)
Length = 1642
Score = 146 bits (355), Expect = 3e-34
Identities = 72/105 (68%), Positives = 84/105 (80%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A++VI+KE+ NVF VYGITVD RHL+LIADYMT++G F+P+SRKGME SSSPLQ
Sbjct: 1533 TYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQ 1592
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
QMSFESSL FLK A + D+L S SS LMVG R GTG F+L
Sbjct: 1593 QMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFEL 1637
>UniRef50_Q16K29 Cluster: DNA-directed RNA polymerase; n=1; Aedes
aegypti|Rep: DNA-directed RNA polymerase - Aedes aegypti
(Yellowfever mosquito)
Length = 1686
Score = 144 bits (350), Expect = 1e-33
Identities = 68/105 (64%), Positives = 84/105 (80%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A +VI+KE+QNVF VYGIT++PRHL L+ADYMT +G F+ MSRKGME++ SPLQ
Sbjct: 1574 TYGIEAAARVIVKEVQNVFKVYGITINPRHLLLVADYMTADGTFKSMSRKGMESNVSPLQ 1633
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
Q+SFESS+ FLK A L D L S SS LMVG+LC++GTG F +
Sbjct: 1634 QISFESSIQFLKAAALKGNGDHLDSPSSRLMVGQLCKSGTGAFSV 1678
>UniRef50_UPI0000ECC670 Cluster: DNA-directed RNA polymerase I largest
subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa subunit)
(RPA194).; n=5; Gallus gallus|Rep: DNA-directed RNA
polymerase I largest subunit (EC 2.7.7.6) (RNA polymerase
I 194 kDa subunit) (RPA194). - Gallus gallus
Length = 917
Score = 140 bits (338), Expect = 3e-32
Identities = 61/105 (58%), Positives = 88/105 (83%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YGIE A +V+IKEI++VF VYGI VDPRHL+L+ADYM + G+++PM+R G+++SSSPLQQ
Sbjct: 809 YGIESALRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGVYKPMNRFGIQSSSSPLQQ 868
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
M+FE+S FLK+A + D+LRS S+CL++G++ + GTG+FDL+
Sbjct: 869 MTFETSYKFLKEATMMGAHDELRSPSACLVLGKVVKGGTGLFDLK 913
>UniRef50_UPI0000F1FC15 Cluster: PREDICTED: similar to polymerase
(RNA) I polypeptide A, 194kDa; n=1; Danio rerio|Rep:
PREDICTED: similar to polymerase (RNA) I polypeptide A,
194kDa - Danio rerio
Length = 1221
Score = 134 bits (323), Expect = 2e-30
Identities = 60/106 (56%), Positives = 85/106 (80%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A +VI KEI++VF VYGI VDPRHL+L+ADYM + G+++P++R G++++SSPLQ
Sbjct: 1112 TYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGIQSNSSPLQ 1171
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
QM+FE+S FLK A + D L S S+CL+VG++ + GTG+FDL+
Sbjct: 1172 QMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGIFDLK 1217
>UniRef50_O95602 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=39; Euteleostomi|Rep: DNA-directed RNA polymerase I
subunit RPA1 - Homo sapiens (Human)
Length = 1717
Score = 132 bits (319), Expect = 7e-30
Identities = 61/106 (57%), Positives = 86/106 (81%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A +VI KEI++VF VYGI VDPRHL+L+ADYM + G+++P++R G+ ++SSPLQ
Sbjct: 1609 TYGIE-ALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQ 1667
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
QM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 1668 QMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 1713
>UniRef50_A7S9W9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1242
Score = 121 bits (292), Expect = 1e-26
Identities = 57/105 (54%), Positives = 78/105 (74%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A + I KE++NVF YGI VDPRHLTL++DYMTY G + +R G+E+S+SP Q
Sbjct: 1133 TYGIEAAARAITKEVKNVFGGYGIHVDPRHLTLVSDYMTYEGKIKAFNRIGIESSASPFQ 1192
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+MSFE++ FL+ A+L+ + L+S SS L+VGR+ GTG F+L
Sbjct: 1193 KMSFETTTHFLRGAVLSGDMESLKSPSSRLVVGRVVGGGTGSFEL 1237
>UniRef50_O17628 Cluster: DNA-directed RNA polymerase; n=3;
Caenorhabditis|Rep: DNA-directed RNA polymerase -
Caenorhabditis elegans
Length = 1737
Score = 116 bits (280), Expect = 4e-25
Identities = 53/104 (50%), Positives = 77/104 (74%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YG+E +K I E+ NVF VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ+
Sbjct: 1607 YGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQK 1666
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
M+FE+++ FL++A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 1667 MTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 1710
>UniRef50_P15398 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=2; Fungi/Metazoa group|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 1689
Score = 114 bits (275), Expect = 1e-24
Identities = 53/104 (50%), Positives = 73/104 (70%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YG+E A I+ E+ +VF VYGI VDPRHL+LIADYMT+ G ++ +R G+E ++SP +
Sbjct: 1576 YGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMGIEYNTSPFAK 1635
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
MSFE++ FL +A L DDL + SS L+VGR+ GTG FD+
Sbjct: 1636 MSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDI 1679
>UniRef50_Q5KIF6 Cluster: DNA-directed RNA polymerase; n=1;
Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 1727
Score = 113 bits (271), Expect = 4e-24
Identities = 51/106 (48%), Positives = 75/106 (70%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
T+G+E A + II E+ +VF YGI VD RHLT+IADYMT+ G F P +R G+ A SSPL
Sbjct: 1617 TFGVEAARRAIIDEVSSVFGAYGIAVDYRHLTIIADYMTHAGGFRPFNRTGISAKSSPLL 1676
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
+ SFE+++ FL +A L+ DDL S ++ +++G+ +GTG FD++
Sbjct: 1677 KASFETTVAFLSEATLHGDFDDLTSPAAKIVMGKPSASGTGAFDIR 1722
>UniRef50_UPI00004998AA Cluster: DNA-directed RNA polymerase I largest
subunit; n=4; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase I largest subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1522
Score = 111 bits (268), Expect = 1e-23
Identities = 50/104 (48%), Positives = 73/104 (70%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YG+E A V+I EI +VF YGI VDPRHL L+ADYMTY G ++ ++R GM+ + SP +
Sbjct: 1412 YGVEAARTVLIHEIDSVFKAYGIDVDPRHLNLVADYMTYEGEYKSLNRSGMDHNPSPFTK 1471
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
++FE+SL FL ++ +KD+LRS S +++G+ GTG FD+
Sbjct: 1472 ITFETSLGFLAKTCVSGQKDNLRSPSGSVVMGKNMVFGTGAFDI 1515
>UniRef50_Q23DD6 Cluster: DNA-directed RNA polymerase; n=1;
Tetrahymena thermophila SB210|Rep: DNA-directed RNA
polymerase - Tetrahymena thermophila SB210
Length = 1727
Score = 111 bits (267), Expect = 1e-23
Identities = 53/106 (50%), Positives = 74/106 (69%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YGIE A I+KEI VF VYG+ VD RHL LIADY+T++G + M+R M+ S SP +
Sbjct: 1620 YGIEAARNAIVKEIVTVFGVYGVVVDYRHLYLIADYLTFSGEMKAMNRVWMDESISPFLK 1679
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 315
MSFE+ + FL +A N++ D L + SS +++GR+ + GTGVFD+ H
Sbjct: 1680 MSFETCVKFLTNAATNNEIDTLSTPSSSIVLGRVPQVGTGVFDILH 1725
>UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2;
Ostreococcus|Rep: DNA-directed RNA polymerase -
Ostreococcus tauri
Length = 1789
Score = 111 bits (266), Expect = 2e-23
Identities = 50/107 (46%), Positives = 71/107 (66%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
T+G+E ++ E+Q VF+VYGI VD RHL+LI D+MT G + P +R G+E S SP
Sbjct: 1668 TFGVEAGRATLVSEVQAVFSVYGIGVDARHLSLIGDFMTQQGEYRPCNRSGIEKSISPFL 1727
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 315
+MS+E++ FL +A + + DDL S SS ++VGR GTG F L+H
Sbjct: 1728 KMSYETATAFLTEATIRGETDDLSSPSSRIVVGRTVNLGTGSFSLKH 1774
>UniRef50_Q7RWI3 Cluster: DNA-directed RNA polymerase; n=4;
Pezizomycotina|Rep: DNA-directed RNA polymerase -
Neurospora crassa
Length = 1674
Score = 109 bits (263), Expect = 4e-23
Identities = 52/104 (50%), Positives = 71/104 (68%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YG+E A I++E+ VF +GI VDPRHL LI DYMT NG F P +R G+ + SP +
Sbjct: 1558 YGVEAARNSIVRELSGVFKGHGIGVDPRHLNLIGDYMTRNGGFTPFNRMGLTGNVSPFTK 1617
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
MS+E+++ FLKDA+L+ D L + S L+VG+L TGTG FD+
Sbjct: 1618 MSYETTVGFLKDAVLDGDWDSLDTPSGRLVVGKLGVTGTGSFDV 1661
>UniRef50_UPI0000E46841 Cluster: PREDICTED: similar to RNA polymerase
I large subunit; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to RNA polymerase I large subunit -
Strongylocentrotus purpuratus
Length = 1742
Score = 109 bits (262), Expect = 5e-23
Identities = 45/87 (51%), Positives = 72/87 (82%)
Frame = -3
Query: 596 EIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKD 417
E+++VF+VYGITVDPRHL+L++DYMT+ G++ P +R G+E+++SP+Q+M+FES + FL++
Sbjct: 1656 EVRDVFSVYGITVDPRHLSLVSDYMTFEGVYRPFNRIGLESNASPIQKMTFESCMRFLRE 1715
Query: 416 AILNSKKDDLRSASSCLMVGRLCRTGT 336
A + KD+L+S S+ L+VGR+ GT
Sbjct: 1716 ATIQGAKDNLQSPSARLVVGRVVNGGT 1742
>UniRef50_A4RCX8 Cluster: DNA-directed RNA polymerase; n=3;
Sordariomycetes|Rep: DNA-directed RNA polymerase -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 1719
Score = 109 bits (261), Expect = 7e-23
Identities = 52/104 (50%), Positives = 71/104 (68%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YG+E II+E++ VF + ITVD RHL LIAD+MT +G F P +R G+ + SP +
Sbjct: 1601 YGVEACRANIIRELRAVFESHAITVDNRHLNLIADHMTRSGGFTPFNRMGLSGNVSPFTK 1660
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
MSFE++L FLKDA+L+ DDL + S L++GRL GTG FD+
Sbjct: 1661 MSFETTLAFLKDAVLDGDWDDLSTPSGRLVMGRLGHVGTGAFDV 1704
>UniRef50_Q8SS15 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA polymerase
- Encephalitozoon cuniculi
Length = 1395
Score = 105 bits (251), Expect = 1e-21
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
T G+E A II E+ VF+VYGI++D RHL LIADYMT G + P SR G+ A SP+Q
Sbjct: 1281 TLGVEAARHAIINEVVKVFDVYGISIDIRHLLLIADYMTRKGSYSPFSRHGLGADDSPIQ 1340
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHS 312
++SFES K A +D L + S+ L VG R GTG FDL H+
Sbjct: 1341 RISFESCYSNFKTAATFHLEDKLSNPSASLTVGNPVRCGTGCFDLIHN 1388
>UniRef50_A7ARZ5 Cluster: DNA directed RNA polymerase; n=1; Babesia
bovis|Rep: DNA directed RNA polymerase - Babesia bovis
Length = 2016
Score = 103 bits (246), Expect = 5e-21
Identities = 52/101 (51%), Positives = 65/101 (64%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YGIE A I+ E+QNVF+VYGI VD RHL+LIAD+MT G +R GM +SPL Q
Sbjct: 1873 YGIEAARASIVSELQNVFSVYGINVDYRHLSLIADFMTNKGDIRTFNRYGMARHASPLLQ 1932
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 330
MSFES+L F+ DA DDL S + ++ GR R G G+
Sbjct: 1933 MSFESTLKFIMDACERGGYDDLGSPAGAIVAGRPIRLGGGL 1973
>UniRef50_Q4UI00 Cluster: DNA-directed RNA polymerase; n=2;
Theileria|Rep: DNA-directed RNA polymerase - Theileria
annulata
Length = 1999
Score = 102 bits (245), Expect = 6e-21
Identities = 52/106 (49%), Positives = 66/106 (62%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YGIE A I+ E+Q VF+VYGI VD RHLTLIAD+MT G +R GM +SPL Q
Sbjct: 1873 YGIEAARSCIVSELQKVFSVYGIKVDYRHLTLIADFMTQKGDVRTFTRYGMARHTSPLLQ 1932
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 315
MSFES++ FL DA D+L+S + LM G+ G+ + L H
Sbjct: 1933 MSFESTMKFLMDASERGAYDNLKSPAGGLMTGKPVHVGSSLCRLMH 1978
>UniRef50_A7PWB4 Cluster: Chromosome chr8 scaffold_34, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr8 scaffold_34, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1518
Score = 102 bits (244), Expect = 8e-21
Identities = 50/106 (47%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASS-SPL 459
T+G+E A IIKE+ NVFN YG+ V+ RHL+LIAD+MT++G + PM+R G A S SP
Sbjct: 1407 TFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPF 1466
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+M+FE++ F+ +A + D+L SAS+ + +G + GTG FDL
Sbjct: 1467 SKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDL 1512
>UniRef50_P10964 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=11; Saccharomycetales|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1664
Score = 101 bits (242), Expect = 1e-20
Identities = 48/105 (45%), Positives = 71/105 (67%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYG+E A I+ EI NVF+ Y I+V RHL LIAD MT G + +R+GME S+S
Sbjct: 1552 TYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGMETSTSSFM 1611
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+MS+E++ FL A+L+++++ L S S+ ++VG+L GTG FD+
Sbjct: 1612 KMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDV 1656
>UniRef50_A1CP71 Cluster: DNA-directed RNA polymerase; n=8;
Eurotiomycetidae|Rep: DNA-directed RNA polymerase -
Aspergillus clavatus
Length = 1734
Score = 100 bits (240), Expect = 3e-20
Identities = 50/105 (47%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQ 456
YG+E A I++E+ +VF + I+VD RHL LI D MT +G F +R G+ + SSSPL
Sbjct: 1625 YGVEAARASIVREMSDVFEGHSISVDNRHLNLIGDVMTQSGGFRAFNRNGLVKDSSSPLA 1684
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+MSFE+++ FLKDA++ D+L+S SS ++VGR GTG FD+
Sbjct: 1685 KMSFETTVGFLKDAVIERDFDNLKSPSSRIVVGRAGMVGTGAFDV 1729
>UniRef50_Q553A1 Cluster: DNA-directed RNA polymerase; n=2;
Dictyostelium discoideum|Rep: DNA-directed RNA polymerase
- Dictyostelium discoideum AX4
Length = 1615
Score = 100 bits (239), Expect = 3e-20
Identities = 45/104 (43%), Positives = 68/104 (65%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YG+E + + EI NVF YGI+VD RHL L+ DYMT+ G + ++R G+E ++SP Q+
Sbjct: 1507 YGVEACRQAVTSEISNVFAAYGISVDKRHLILLGDYMTFEGGYRALNRIGIENNTSPFQK 1566
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
MSFE++ FL A L D + S SS +++G++ + GTG F +
Sbjct: 1567 MSFETTFSFLSKASLMGDYDTVTSPSSRIVLGQIVKNGTGSFTI 1610
>UniRef50_Q6C1S4 Cluster: DNA-directed RNA polymerase; n=1; Yarrowia
lipolytica|Rep: DNA-directed RNA polymerase - Yarrowia
lipolytica (Candida lipolytica)
Length = 1628
Score = 100 bits (239), Expect = 3e-20
Identities = 47/106 (44%), Positives = 71/106 (66%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYG+E A +++EI NVF Y ITV+ RHL LIAD MT G + +R G+++++SP
Sbjct: 1514 TYGVEAARNTMVQEINNVFKTYAITVNLRHLELIADMMTREGTYLAFNRMGVDSNTSPFL 1573
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
+MS+E++ FL A+L+ D L S S+ +++GRL GTG FD++
Sbjct: 1574 KMSYETTCGFLTKAVLDGGCDALESPSARIVIGRLSGVGTGSFDVK 1619
>UniRef50_Q69X40 Cluster: DNA-directed RNA polymerase; n=6; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 1748
Score = 99.1 bits (236), Expect = 8e-20
Identities = 48/106 (45%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
TYG+E A II E++ VF YGI VD RHL LIAD+MT++G + PMSR GM + S+SP
Sbjct: 1631 TYGVEAARATIIGEVKGVFGAYGIHVDMRHLNLIADFMTFDGGYRPMSRLGMGQFSTSPF 1690
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+M+FE++ F+ +A + + D L S+ + +G+ + GTG F L
Sbjct: 1691 GKMTFETATKFIVEAASHGESDTLDGPSASVCLGKPVKVGTGSFGL 1736
>UniRef50_Q4PB85 Cluster: DNA-directed RNA polymerase; n=1; Ustilago
maydis|Rep: DNA-directed RNA polymerase - Ustilago maydis
(Smut fungus)
Length = 1795
Score = 98.7 bits (235), Expect = 1e-19
Identities = 47/106 (44%), Positives = 69/106 (65%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYG+E A I+ E++ +F+ YGI V PRHL LIADY T G F P +R G+ SSS L
Sbjct: 1679 TYGVEAARAAIVAEMRGIFDTYGIAVSPRHLFLIADYQTAAGGFRPFNRSGISESSSTLL 1738
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
+ SFE ++ F+ + L+ + D L++ SS L+VGR +GTG +++
Sbjct: 1739 KASFEMTMAFIGGSALHGEVDMLKTPSSKLVVGRPVNSGTGTPEIR 1784
>UniRef50_Q9SVY0 Cluster: DNA-directed RNA polymerase I 190K
chain-like protein; n=1; Arabidopsis thaliana|Rep:
DNA-directed RNA polymerase I 190K chain-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1670
Score = 97.1 bits (231), Expect = 3e-19
Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRK-GMEASSSPLQ 456
+G+E A + II+EI +VF YGI+V RHL LIADYMT++G + PMSR G+ S+SP
Sbjct: 1560 FGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFC 1619
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+M+FE++ F+ A +KD L + S+ + +G +GTG FDL
Sbjct: 1620 RMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDL 1664
>UniRef50_Q5CFH2 Cluster: RNA polymerase A/beta'/A'' subunit; n=1;
Cryptosporidium hominis|Rep: RNA polymerase A/beta'/A''
subunit - Cryptosporidium hominis
Length = 472
Score = 96.7 bits (230), Expect = 4e-19
Identities = 48/102 (47%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG-MEASSSPLQ 456
YG+E A II E++NVF+VYGI VD RHLTLI+D +T +G +R G + + SP
Sbjct: 315 YGVEAARHCIINELRNVFSVYGINVDYRHLTLISDSITASGKLRVFNRMGTISYNISPFL 374
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 330
QMSFE+S+ FL +A L D+L+S +S + VG++ GTG+
Sbjct: 375 QMSFETSMKFLTEACLRGALDNLKSPASSISVGKMVSVGTGI 416
>UniRef50_A0DJB3 Cluster: DNA-directed RNA polymerase; n=2;
Oligohymenophorea|Rep: DNA-directed RNA polymerase -
Paramecium tetraurelia
Length = 1696
Score = 96.7 bits (230), Expect = 4e-19
Identities = 47/104 (45%), Positives = 68/104 (65%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
+GIE A IIKEI VF YG+ VD RHL LIADYMT+ G M+R M+ +++P +
Sbjct: 1585 FGIEAARNAIIKEILAVFGAYGVAVDYRHLYLIADYMTFGGQIRAMNRIYMDFNTAPFGK 1644
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
M+FE+S FL +A LN + D + SS L++GR+ + G+ + D+
Sbjct: 1645 MTFETSTQFLTNACLNRETDTFNNLSSQLVIGRVPKVGSNLCDV 1688
>UniRef50_A6R8S3 Cluster: DNA-directed RNA polymerase; n=1;
Ajellomyces capsulatus NAm1|Rep: DNA-directed RNA
polymerase - Ajellomyces capsulatus NAm1
Length = 1573
Score = 95.1 bits (226), Expect = 1e-18
Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 1/105 (0%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQ 456
YG+E A II+E+ VF+ + I+VD RHL LI D MT+ G F +R G+ + S+SP
Sbjct: 1464 YGVEAARACIIREMAAVFDGHSISVDNRHLNLIGDVMTHAGSFRAFNRMGLVKDSTSPFM 1523
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+MSFE+++ FL+DA+L D+L SS +++GR+ GTG FD+
Sbjct: 1524 KMSFETTVGFLRDAVLERDCDNLNGPSSRIVMGRVGTVGTGAFDV 1568
>UniRef50_A5KB21 Cluster: DNA-directed RNA polymerase; n=1; Plasmodium
vivax|Rep: DNA-directed RNA polymerase - Plasmodium vivax
Length = 2695
Score = 86.2 bits (204), Expect = 6e-16
Identities = 44/112 (39%), Positives = 65/112 (58%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE I KE++ VF YGI +D RHL+ I+D+MT+ G + SR G+ +
Sbjct: 2583 TYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHTGDLKSFSRHGLGCFRNVFH 2642
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHLYG 300
+MSFE + FL +++ D L +ASS L G+ + GT V D+ +H+ G
Sbjct: 2643 KMSFECATNFLTQGCVHNSVDYLSTASSSLFFGKPIKVGTNVADIV-THIEG 2693
>UniRef50_Q7RJK4 Cluster: DNA-directed RNA polymerase; n=13;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
yoelii yoelii
Length = 2594
Score = 84.2 bits (199), Expect = 2e-15
Identities = 43/113 (38%), Positives = 63/113 (55%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE I KE++ VF YGI +D RHL+ I+D+MT+ G + +R GM A +
Sbjct: 2482 TYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHTGDLKSFNRYGMAACRNVFH 2541
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHLYGK 297
+MSFE + F+ + + D L + SS L G+ + GT V ++ S GK
Sbjct: 2542 KMSFECATTFMIQGCIQNSVDYLSTPSSSLFFGKHIKVGTNVSNIVTSIKAGK 2594
>UniRef50_Q7R0K2 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 2142
Score = 83.8 bits (198), Expect = 3e-15
Identities = 46/104 (44%), Positives = 59/104 (56%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YGIE A II+EI VF+ Y I VD RHL+LIAD MT +G ++R M + L +
Sbjct: 2035 YGIEAARNAIIEEIHRVFSTYHIEVDERHLSLIADSMTLSGCVRGLNRLEMRHQTEELLK 2094
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFES+ L L S D LR+ + + VG+ GTG FDL
Sbjct: 2095 ASFESACTSLAAGALTSGFDSLRAPAGAVTVGQYPSQGTGSFDL 2138
>UniRef50_Q26008 Cluster: DNA-directed RNA polymerase; n=2; Plasmodium
falciparum|Rep: DNA-directed RNA polymerase - Plasmodium
falciparum
Length = 2910
Score = 81.8 bits (193), Expect = 1e-14
Identities = 40/105 (38%), Positives = 62/105 (59%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE I KE++ VF+ YGI +D RHL+ I+D+MT+ G + +R G+ +
Sbjct: 2800 TYGIEAGRLCITKELKKVFDAYGIQIDFRHLSFISDFMTHTGDLKAFNRHGLGYFRNVFH 2859
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+MSFE + FL +++ D L +ASS L G+ + GT + D+
Sbjct: 2860 KMSFECATNFLIQGCIHNSIDYLSTASSSLFFGKHIKVGTNLADI 2904
>UniRef50_Q01DV6 Cluster: DNA-directed RNA polymerase; n=15;
Eukaryota|Rep: DNA-directed RNA polymerase - Ostreococcus
tauri
Length = 1406
Score = 80.2 bits (189), Expect = 4e-14
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A IIKEI + +G+++D RH L+AD MTY G ++R GM + S L
Sbjct: 1265 TLGIEAARACIIKEIDDTMRAHGMSIDNRHSMLLADVMTYKGEVLGITRFGMAKMKDSVL 1324
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHLYGKVNL 288
SFE + L DA L+ + D + S C+++G GTG+F LQH + +V++
Sbjct: 1325 MLASFEKTTDHLFDAALHGRTDYIDGVSECIIMGIPMPIGTGMFRLQHRAMKLEVDI 1381
>UniRef50_UPI000049A544 Cluster: DNA-directed RNA polymerase III
largest subunit; n=1; Entamoeba histolytica
HM-1:IMSS|Rep: DNA-directed RNA polymerase III largest
subunit - Entamoeba histolytica HM-1:IMSS
Length = 1379
Score = 79.0 bits (186), Expect = 9e-14
Identities = 39/104 (37%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE A II EI+NV + YG+++D RHL L++D MT+ G+ ++R G+ + S
Sbjct: 1258 GIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGVILGITRYGISKMKDSVFTF 1317
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE + L DA ++S+KD+++ S ++VG GTG+ +
Sbjct: 1318 ASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGLMQI 1361
>UniRef50_Q3SE61 Cluster: DNA-directed RNA polymerase; n=2; Paramecium
tetraurelia|Rep: DNA-directed RNA polymerase - Paramecium
tetraurelia
Length = 1751
Score = 77.4 bits (182), Expect = 3e-13
Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME--ASSSPLQ 456
GIE A ++ E + +FN YGI ++ RHL L+ D+MT+ G ++R G+ S L+
Sbjct: 1425 GIEAARAALVGETRKIFNHYGIYINYRHLYLLYDWMTHRGRLTAVNRNGINRIPEVSVLR 1484
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+ SFE ++ L DA + S+ D +R S ++ G+LC GTG F+L
Sbjct: 1485 KSSFEETVEILYDAAVFSEIDHMRGLSENIIFGQLCPHGTGCFEL 1529
>UniRef50_Q7YYV9 Cluster: DNA-directed RNA polymerase; n=3;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum
Length = 1907
Score = 76.6 bits (180), Expect = 5e-13
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME-ASSSPLQQ 453
GIE A KVII+E+Q + Y + +D RH+ L+AD MT+ G +SR G++ +S L
Sbjct: 1761 GIEAARKVIIQEVQKCMDAYSMDIDLRHIQLLADIMTFRGDVLGISRFGIQKMRTSTLML 1820
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHS 312
SFE + L +A ++ D + S C+++G+ + GTG FD+ ++
Sbjct: 1821 ASFEETNEHLFEAAFQNRVDPVFGVSECVIMGKPIKIGTGSFDILYN 1867
>UniRef50_Q4U940 Cluster: DNA-directed RNA polymerase III largest
subunit (RPC homologue), putative; n=2; Theileria|Rep:
DNA-directed RNA polymerase III largest subunit (RPC
homologue), putative - Theileria annulata
Length = 1648
Score = 76.6 bits (180), Expect = 5e-13
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME-ASSSPLQQ 453
GIE A VII EIQ + Y I +D R++ L+ D MT+ G ++R G++ SS L
Sbjct: 1541 GIEAARSVIISEIQKCMDAYSIDIDCRYMKLLGDVMTFRGEVVGINRFGIQKMRSSALML 1600
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 309
SFE + L +A L+ ++D ++ S C+++G+ GTG FD+ S+
Sbjct: 1601 ASFEETNDHLLEAALHHRRDPIKGVSECIIMGKPISLGTGSFDILMSN 1648
>UniRef50_P16355 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=3; Trypanosoma brucei|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Trypanosoma brucei brucei
Length = 1744
Score = 76.6 bits (180), Expect = 5e-13
Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQ 456
+GIE + E+ +FN Y VDPRHL+LIAD T+ G +E + G+ S+SPL
Sbjct: 1626 FGIESGYAALYDELNKLFNRYN--VDPRHLSLIADTSTHRGRWENFNFTGVISTSASPLF 1683
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGT 336
QM+F SS +L A+ DDL S SS +MVG R GT
Sbjct: 1684 QMTFASSKRWLHRAVSRGMSDDLESFSSAIMVGERPRVGT 1723
>UniRef50_UPI00006CF1E9 Cluster: RNA polymerase Rpb1, domain 2 family
protein; n=1; Tetrahymena thermophila SB210|Rep: RNA
polymerase Rpb1, domain 2 family protein - Tetrahymena
thermophila SB210
Length = 1759
Score = 75.4 bits (177), Expect = 1e-12
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME--ASSSPLQ 456
GIE + I+ +I+ V YGI ++ RHL ++A++MT G P++R G+ S L+
Sbjct: 1426 GIEAGRRSIVNQIRVVIEPYGIYINYRHLAILAEWMTVRGRLTPINRNGINRIPGLSCLR 1485
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+ SFE ++ L A + +KDDL+ + ++ G+ C GTG FDL
Sbjct: 1486 KSSFEETVDILNTAAIFFEKDDLKGVTENIIFGQNCDIGTGCFDL 1530
>UniRef50_P04051 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=9; Dikarya|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1460
Score = 75.4 bits (177), Expect = 1e-12
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE A II+EI + +G++VDPRH+ L+ D MTY G ++R G+ + S LQ
Sbjct: 1327 GIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQL 1386
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 327
SFE + L DA KKD + S C+++G+ GTG F
Sbjct: 1387 ASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSF 1428
>UniRef50_Q4A369 Cluster: DNA-directed RNA polymerase; n=1; Emiliania
huxleyi virus 86|Rep: DNA-directed RNA polymerase -
Emiliania huxleyi virus 86
Length = 1468
Score = 74.9 bits (176), Expect = 1e-12
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A +I E+ + G +DPRH+ L A MT G P++R G+ + PL
Sbjct: 1307 TLGIEAALTMIFNELHSTLTADGSYIDPRHIELTASTMTLRGYVMPLNRHGLNNIKTGPL 1366
Query: 458 QQMSFESSLLFLKDAILNSKKDDLR-SASSCLMVGRLCRTGTGVFDLQ 318
+ SFE + LKDA + ++ +D+ S S+ +M+G+L GTG FD++
Sbjct: 1367 TRSSFEETSEVLKDAAIFAESEDVSGSVSASIMMGQLSAIGTGRFDVR 1414
>UniRef50_Q9AW39 Cluster: DNA-directed RNA polymerase; n=1; Guillardia
theta|Rep: DNA-directed RNA polymerase - Guillardia theta
(Cryptomonas phi)
Length = 1434
Score = 74.5 bits (175), Expect = 2e-12
Identities = 34/106 (32%), Positives = 60/106 (56%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
+GIE +++ E+ N+F GI + +H+ I+DYMT G P +R M+ + +Q+
Sbjct: 1329 FGIEAGREILTIELMNIFKNQGIVISNKHIDTISDYMTRLGYLRPFNRNYMKEEAG-IQE 1387
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 315
+S+E++LL LK L K + + S + G C GTG+F++ +
Sbjct: 1388 ISYETALLHLKKYALGKKIESIECISDKIAFGLPCNIGTGLFEINN 1433
>UniRef50_Q74MX8 Cluster: NEQ427; n=1; Nanoarchaeum equitans|Rep:
NEQ427 - Nanoarchaeum equitans
Length = 374
Score = 74.5 bits (175), Expect = 2e-12
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG-MEASSSPLQQ 453
GI+ A + II+EIQ V G+ +D R+L LIAD MTY G +R G ME SPL++
Sbjct: 255 GIDAAREAIIEEIQKVLEEQGLEIDVRYLLLIADVMTYYGEVLGFTRHGLMERKPSPLER 314
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 333
+FE L DA L +KDDLR+ +++ + GTG
Sbjct: 315 ATFEVPFKNLADAALLGEKDDLRAVIVNVLINQPAPMGTG 354
>UniRef50_A3AV59 Cluster: DNA-directed RNA polymerase; n=1; Oryza
sativa (japonica cultivar-group)|Rep: DNA-directed RNA
polymerase - Oryza sativa subsp. japonica (Rice)
Length = 1257
Score = 73.3 bits (172), Expect = 4e-12
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A + II EIQ +G+ +D RH+ L+AD MTY G ++R G+ + SS L
Sbjct: 1133 TLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVL 1192
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
SFE + L +A + ++D + S C+++G + GTG+ ++
Sbjct: 1193 MLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVR 1239
>UniRef50_A5K7P4 Cluster: DNA-directed RNA polymerase; n=13;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
vivax
Length = 2379
Score = 73.3 bits (172), Expect = 4e-12
Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME-ASSSPLQQ 453
GIE + ++KE++ V + V+ RHL+++ D MT G ++R G+ PL +
Sbjct: 1856 GIEAVRRALLKELRTVISFDSSYVNYRHLSILCDVMTQRGYLMSITRHGINRVDRGPLVK 1915
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A ++ D+L+ + +M+G+LC+ GTGVFD+
Sbjct: 1916 CSFEETVEILLEAAAFAQVDNLKGITENIMLGQLCKIGTGVFDI 1959
>UniRef50_Q9BMP2 Cluster: DNA-directed RNA polymerase; n=2;
Stylonychia|Rep: DNA-directed RNA polymerase -
Stylonychia mytilus
Length = 1678
Score = 72.9 bits (171), Expect = 6e-12
Identities = 37/104 (35%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE +I E++ V + YGI V+ RHL+ + D MT GI ++R G+ SSPL++
Sbjct: 1254 GIEAVRMSLINELRFVLSSYGIYVNYRHLSTLCDVMTQRGILTAITRHGINRVDSSPLRK 1313
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A + ++ D L+ + +++G+L GTG F++
Sbjct: 1314 CSFEETVEILLEAAVFAETDPLKGITENIIMGQLAPFGTGCFEI 1357
>UniRef50_A7AWJ0 Cluster: DNA-directed RNA polymerase II largest
subunit, putative; n=2; Eukaryota|Rep: DNA-directed RNA
polymerase II largest subunit, putative - Babesia bovis
Length = 1746
Score = 72.9 bits (171), Expect = 6e-12
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME-ASSSPLQQ 453
GIE A +++E++ V + G V+ RHL+L+ D MT G ++R G+ A PL +
Sbjct: 1358 GIEAARMALLRELRAVISFDGSYVNYRHLSLLCDVMTQKGHIMSITRHGLNRADRGPLVK 1417
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE +L L DA + ++ D L+ + +M+G+LC GTG FD+
Sbjct: 1418 CSFEETLEALVDAAVFAELDLLKGVTENVMLGQLCPMGTGSFDI 1461
>UniRef50_A7AP17 Cluster: RNA polymerase Rpb1, domain containing
protein; n=1; Babesia bovis|Rep: RNA polymerase Rpb1,
domain containing protein - Babesia bovis
Length = 1541
Score = 72.9 bits (171), Expect = 6e-12
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME-ASSSPLQQ 453
GIE A VII EIQ + Y I +D R++ L+ D MT+ G ++R G++ +S L
Sbjct: 1429 GIEAARSVIISEIQKCMDAYSIDIDQRYMKLLGDVMTFRGEVIGINRFGIQKMRASTLML 1488
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE + L +A ++ +D ++ S C+++G+ GTG FD+
Sbjct: 1489 ASFEETNEHLFEAAVHRLRDPIKGVSECIIMGKQVPLGTGAFDV 1532
>UniRef50_Q4QEN2 Cluster: DNA-directed RNA polymerase I largest
subunit, putative; n=3; Leishmania|Rep: DNA-directed RNA
polymerase I largest subunit, putative - Leishmania major
Length = 1809
Score = 72.5 bits (170), Expect = 8e-12
Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEA-SSSPL 459
++G+E + E++ +F Y +VD HLTLIAD T+ G++E + G+ + S+SPL
Sbjct: 1690 SFGVESGYTALFDELEKLFKRY--SVDYHHLTLIADAATHRGVWENYNFTGVISHSASPL 1747
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 330
QM+F SS FL A+ D+L S SS +MVG R GT +
Sbjct: 1748 FQMTFASSKRFLHTALTRGIGDELNSISSAIMVGERPRVGTAL 1790
>UniRef50_Q4D133 Cluster: DNA-directed RNA polymerase; n=7;
Trypanosomatidae|Rep: DNA-directed RNA polymerase -
Trypanosoma cruzi
Length = 1802
Score = 72.5 bits (170), Expect = 8e-12
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQ 456
+G+E A + + E+ +F Y +VD RHLTLIAD T+ G +E + G+ S+SPL
Sbjct: 1684 FGVESAYRTLYDELFKLFKRY--SVDHRHLTLIADAATHRGTWENFNFTGVISQSASPLF 1741
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
QM+F SS +L A+ D+L+S SS +MVG + GT L
Sbjct: 1742 QMTFASSKRWLHTAVSRGLSDELQSISSAIMVGERPKVGTACVKL 1786
>UniRef50_Q54ZZ2 Cluster: DNA-directed RNA polymerase; n=2;
Dictyostelium discoideum|Rep: DNA-directed RNA polymerase
- Dictyostelium discoideum AX4
Length = 1450
Score = 72.1 bits (169), Expect = 1e-11
Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A I+ EI + +G+++D RH+ L+AD M++ G ++R G+ + S L
Sbjct: 1327 TLGIETARNTIMSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFGIAKMKESVL 1386
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE + L DA ++ ++DD+ S C+++G + GTG+F L
Sbjct: 1387 MLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGVVIPLGTGLFKL 1432
>UniRef50_O77165 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase - Breviata
anathema
Length = 1690
Score = 72.1 bits (169), Expect = 1e-11
Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSP-LQQ 453
G+E A ++KE+++V G ++ RHL ++ D MT+ G ++R GM + + L +
Sbjct: 1299 GVEAARAALLKELRDVLGFDGSYINIRHLLMLVDVMTFRGYLMSITRFGMNRTDNGILMR 1358
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L+DA + D+LR S +M+G++ GTG FDL
Sbjct: 1359 ASFEETVDVLQDAAQFAGHDELRGVSDNIMLGQVAPVGTGTFDL 1402
>UniRef50_Q8SRM3 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA polymerase
- Encephalitozoon cuniculi
Length = 1349
Score = 72.1 bits (169), Expect = 1e-11
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE A II EI+ + +GI +DPRH+ L+AD MTY G ++R G+ + S S L
Sbjct: 1240 GIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGISKMSRSTLML 1299
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE + +L +A + SK D++ S +++G GTG DL
Sbjct: 1300 ASFEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTGSMDL 1343
>UniRef50_P14248 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=3; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Plasmodium falciparum (isolate CDC /
Honduras)
Length = 2452
Score = 72.1 bits (169), Expect = 1e-11
Identities = 35/104 (33%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME-ASSSPLQQ 453
GIE + ++KE++ V + V+ RHL+++ D MT G ++R G+ PL +
Sbjct: 1950 GIEAVRRALLKELRTVISFDSSYVNYRHLSILCDVMTQKGYLMSITRHGINRVDKGPLIK 2009
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A ++ D+LR + +M+G+LC+ GTG FD+
Sbjct: 2010 CSFEETVEILLEAAAFAQVDNLRGITENIMLGQLCKIGTGSFDI 2053
>UniRef50_Q22M85 Cluster: DNA-directed RNA polymerase; n=1;
Tetrahymena thermophila SB210|Rep: DNA-directed RNA
polymerase - Tetrahymena thermophila SB210
Length = 1418
Score = 71.7 bits (168), Expect = 1e-11
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEA-SSSPLQQ 453
G+E A K II EI + + VD RHL L+AD +T G +R+G+ + S L
Sbjct: 1285 GVEAARKTIINEITKTIKSHSLNVDRRHLILVADVLTSKGRLHGSTRQGINSMKDSTLML 1344
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 309
SFE + L +A L +KD L S +++G+ GTG F+L + +
Sbjct: 1345 ASFEKTTEILYNAALQGRKDTLEGVSERIIIGQNIPMGTGTFNLLYGN 1392
>UniRef50_Q7RXJ6 Cluster: DNA-directed RNA polymerase; n=4; root|Rep:
DNA-directed RNA polymerase - Neurospora crassa
Length = 1533
Score = 71.7 bits (168), Expect = 1e-11
Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE A I KEI +V GI DPRH+ L+AD MTY G ++R G+ + S LQ
Sbjct: 1366 GIEAARTTIAKEIGSVMGDMGI--DPRHMDLLADVMTYKGEILGITRHGLAKMRDSVLQL 1423
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE + L DA K D + S C+++G+ + GTG F +
Sbjct: 1424 ASFERTPDHLFDAAAGMKTDRILGVSECIIMGQTMKIGTGAFQV 1467
>UniRef50_O14802 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=17; Bilateria|Rep: DNA-directed RNA polymerase
III subunit RPC1 - Homo sapiens (Human)
Length = 1391
Score = 70.9 bits (166), Expect = 2e-11
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNV-YGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSP 462
T GIE A II EIQ V +G+++D RH+ L++D MTY G ++R G+ + S
Sbjct: 1257 TLGIEAARTTIINEIQYTMVVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1316
Query: 461 LQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 315
L SFE + L DA +KD + S C+++G GTG+F L H
Sbjct: 1317 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLH 1365
>UniRef50_Q4N0F9 Cluster: DNA-directed RNA polymerase II largest
subunit, putative; n=3; Apicomplexa|Rep: DNA-directed RNA
polymerase II largest subunit, putative - Theileria parva
Length = 1681
Score = 70.5 bits (165), Expect = 3e-11
Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQ 456
+GIE A + +++EI+ V + G V+ RHL+L+ D MT G ++R G+ A PL
Sbjct: 1353 FGIEAARRALLREIRAVISFDGAYVNYRHLSLLCDIMTQKGYLMSITRHGINRADRGPLI 1412
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+ SFE +L L A + + D L+ + ++VG+L GTG FD+
Sbjct: 1413 KCSFEETLETLLTAAVFGEVDHLKGVTENVIVGQLSPYGTGAFDI 1457
>UniRef50_P17545 Cluster: DNA-directed RNA polymerase II subunit
RPB1-B; n=60; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II subunit RPB1-B - Trypanosoma brucei brucei
Length = 1766
Score = 70.5 bits (165), Expect = 3e-11
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEAS--SSPLQ 456
GIE A ++ E++ + YG+ ++ RH T++ D + +G +SR G+ S S PL
Sbjct: 1366 GIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSGINRSDTSGPLM 1425
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+ SFE ++ L A + D +R S+ L++G R GTG+FDL
Sbjct: 1426 RCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDL 1470
>UniRef50_Q9LVH0 Cluster: DNA-directed RNA polymerase; n=11;
Euphyllophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1383
Score = 69.7 bits (163), Expect = 5e-11
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME-ASSSPL 459
T GIE A II EI V +G+++D RH+ L+AD MTY G + R G++ S L
Sbjct: 1259 TLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVL 1318
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 330
Q SFE + L A + K D++ + C+++G + GTG+
Sbjct: 1319 MQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGI 1361
>UniRef50_P08968 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase III subunit RPC1 - Trypanosoma brucei brucei
Length = 1530
Score = 69.7 bits (163), Expect = 5e-11
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASS-SPLQQ 453
GIE A +VI+ EIQN+ Y +++D RH+ L+AD MT G+ ++R G++ + + L
Sbjct: 1380 GIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQRGVVLGITRYGIQKMNFNVLTM 1439
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE + L +A + D S S ++VG+ GT FDL
Sbjct: 1440 ASFERTTDHLYNAAATQRVDRDLSVSDSIIVGKPVPLGTTSFDL 1483
>UniRef50_Q3SE62 Cluster: DNA-directed RNA polymerase; n=3; Paramecium
tetraurelia|Rep: DNA-directed RNA polymerase - Paramecium
tetraurelia
Length = 1368
Score = 69.3 bits (162), Expect = 7e-11
Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE A + I+ E+ + I++D RH+ L+A+ MT+ G +R+G+ + +S L
Sbjct: 1241 GIEAARQSIVNEVYTTMQSHSISIDIRHILLLAELMTFKGRILGFTRQGIDQLKNSALML 1300
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ +A + K+D + AS +++G+ GTG+FDL
Sbjct: 1301 ASFEKTMDVFFNAAIQGKQDSMNGASQRVIIGQNVPQGTGMFDL 1344
>UniRef50_O94666 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=2; Dikarya|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Schizosaccharomyces pombe (Fission yeast)
Length = 1405
Score = 69.3 bits (162), Expect = 7e-11
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE A II EI +G+TVDPRH+ L+ D MT G ++R G+ + S L
Sbjct: 1273 GIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLAL 1332
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE + L +A KD + S C+++G+L GT VF L
Sbjct: 1333 ASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQL 1376
>UniRef50_A1RWW4 Cluster: DNA-directed RNA polymerase, subunit A'';
n=1; Thermofilum pendens Hrk 5|Rep: DNA-directed RNA
polymerase, subunit A'' - Thermofilum pendens (strain
Hrk 5)
Length = 403
Score = 68.9 bits (161), Expect = 9e-11
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEA-SSSPLQQ 453
GIE A IIKEI+ V + +G+ VD RH+ ++AD MTY+G + R G+ S L +
Sbjct: 284 GIEAARAAIIKEIKKVLDEHGLDVDWRHIMMVADAMTYSGKVRQVGRHGVAGEKGSVLAR 343
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVG-RLCRTGTGVFDLQHSHLYGK 297
SFE ++ L +A L + D+LR +++G + GTG L+ + +G+
Sbjct: 344 ASFEVTVKNLVEAALRGELDELRGVIENVIIGSKPIPLGTGSVKLKMRYEFGQ 396
>UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=473; cellular organisms|Rep: DNA-directed RNA
polymerase II subunit RPB1 - Homo sapiens (Human)
Length = 1970
Score = 68.9 bits (161), Expect = 9e-11
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSS-PLQQ 453
GIE K + +E+ +V + G V+ RHL L+ D MT G ++R G+ + PL +
Sbjct: 1370 GIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMK 1429
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A + + D ++ S +M+G+L GTG FDL
Sbjct: 1430 CSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473
>UniRef50_Q010D7 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase - Ostreococcus
tauri
Length = 1673
Score = 68.1 bits (159), Expect = 2e-10
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE +++E++ V G V+ RHL ++ + MTY G ++R G+ A + L +
Sbjct: 1356 GIEAVRNTLLRELRGVIEFDGSYVNYRHLAILVEVMTYRGHLVSITRHGINRAETGALMR 1415
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A S++D++ S +M+G+ C GTG F L
Sbjct: 1416 CSFEETVDILMEAAAFSERDNMTGPSENIMLGQFCPIGTGEFKL 1459
>UniRef50_Q8MX30 Cluster: DNA-directed RNA polymerase; n=1; Naegleria
gruberi|Rep: DNA-directed RNA polymerase - Naegleria
gruberi
Length = 1590
Score = 68.1 bits (159), Expect = 2e-10
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEAS-SSPLQQ 453
GIE +++E++ V G V+ RHL ++ D MT+ G ++R+G+ S + PL +
Sbjct: 1325 GIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVMTHRGGLMAITRRGINRSDTGPLMR 1384
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A + D L+ S+ +MVG+L GTG F L
Sbjct: 1385 CSFEETVEILIEAATFADTDTLKGVSANVMVGQLAPIGTGCFGL 1428
>UniRef50_Q5CUJ2 Cluster: DNA-directed RNA polymerase; n=3;
Eukaryota|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum Iowa II
Length = 1902
Score = 68.1 bits (159), Expect = 2e-10
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE + +++E++ V + G V+ RHL L+ D MT G ++R G+ PLQ+
Sbjct: 1413 GIEAVRRALLRELRTVISFDGSYVNYRHLALLCDNMTQKGHLMSITRHGINRVDKGPLQK 1472
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L DA + + D L S +M+G+L GT FD+
Sbjct: 1473 CSFEETVEVLMDAAMFGETDYLNGVSENVMLGQLAPYGTACFDV 1516
>UniRef50_P15354 Cluster: DNA-directed RNA polymerase subunit A'';
n=6; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit A'' - Halobacterium salinarium (Halobacterium
halobium)
Length = 397
Score = 68.1 bits (159), Expect = 2e-10
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGIT-VDPRHLTLIADYMTYNGIFEPMSRKGMEAS-SSP 462
T GIE A + II E G+ V+ RHL L+AD MT +G E + R G+ + +S
Sbjct: 282 TLGIEAAREAIINETMTTLEEQGLDDVNIRHLMLVADIMTNDGTIESIGRHGISGNKNSV 341
Query: 461 LQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
L + +FE ++ L DA ++ + DDL ++VG+ R GTG DL+
Sbjct: 342 LARAAFEVTVNHLLDAAIHGESDDLDGVIENVIVGKPVRLGTGDVDLR 389
>UniRef50_Q98RN1 Cluster: DNA-directed RNA polymerase; n=1; Guillardia
theta|Rep: DNA-directed RNA polymerase - Guillardia theta
(Cryptomonas phi)
Length = 1289
Score = 67.7 bits (158), Expect = 2e-10
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEAS-SSPLQQ 453
GIE + ++I+ EI N F +GI D RH+ L+ADYMT+NG ++R+G+ + S
Sbjct: 1188 GIEASRELIVLEITNTFKSHGIFSDNRHVYLLADYMTFNGFIIGINREGLTCNKESVFLL 1247
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 330
SFE ++ L +A LN K S ++ G GTG+
Sbjct: 1248 ASFEKTMENLFNASLNHTKSKYIGVSDAIIFGNSIPIGTGL 1288
>UniRef50_Q4SF83 Cluster: DNA-directed RNA polymerase; n=1; Tetraodon
nigroviridis|Rep: DNA-directed RNA polymerase - Tetraodon
nigroviridis (Green puffer)
Length = 1745
Score = 66.9 bits (156), Expect = 4e-10
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSS-PLQQ 453
GIE K + +E+ +V + G V+ RHL L+ D MT G ++R G+ + PL +
Sbjct: 1283 GIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMK 1342
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A + + D ++ S +M+G+L GTG FDL
Sbjct: 1343 CSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDL 1386
>UniRef50_A6SCV1 Cluster: DNA-directed RNA polymerase; n=19;
Fungi/Metazoa group|Rep: DNA-directed RNA polymerase -
Botryotinia fuckeliana B05.10
Length = 1468
Score = 66.5 bits (155), Expect = 5e-10
Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE A I EI V + + +DPRH+ L+AD MTY G ++R G+ + S LQ
Sbjct: 1329 GIEAARSTIANEIATV--MADMDIDPRHMQLLADVMTYKGEVLGITRFGLSKMRDSVLQL 1386
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 327
SFE + L DA K D + S C+++G+ GTG F
Sbjct: 1387 ASFEKTPDHLFDAAAGMKTDRIEGVSECIIMGQTMGVGTGAF 1428
>UniRef50_Q9AVW8 Cluster: DNA-directed RNA polymerase II largest
chain; n=1; Guillardia theta|Rep: DNA-directed RNA
polymerase II largest chain - Guillardia theta
(Cryptomonas phi)
Length = 1473
Score = 66.1 bits (154), Expect = 7e-10
Identities = 32/104 (30%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE K++I+E++N+ + G V+ RHL + D +T+ G ++R G+ + +S P+ +
Sbjct: 1366 GIEATRKILIQELRNLISFDGSYVNYRHLCTLVDLITFRGSLMSINRHGINKCNSGPIAK 1425
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+FE ++ ++ + D+LR S+ +M G + + GTG DL
Sbjct: 1426 STFEETVDIFYESAVFGLNDNLRGVSAQIMTGMVPKIGTGKIDL 1469
>UniRef50_A3BPR9 Cluster: DNA-directed RNA polymerase; n=7;
Magnoliophyta|Rep: DNA-directed RNA polymerase - Oryza
sativa subsp. japonica (Rice)
Length = 1507
Score = 66.1 bits (154), Expect = 7e-10
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEAS-SSPLQQ 453
GIE + ++ E++ V + G V+ RHL ++ D MTY G ++R G+ + + PL +
Sbjct: 1012 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMR 1071
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 333
SFE ++ L DA + ++ D LR + +M+G+L GTG
Sbjct: 1072 CSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTG 1111
>UniRef50_Q8SSC4 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=15; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Encephalitozoon cuniculi
Length = 1599
Score = 65.7 bits (153), Expect = 9e-10
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A + I++E+ V + G V+ RH++L+AD MT G ++R G+ + + L
Sbjct: 1301 TLGIEAARESILRELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGAL 1360
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
++ SFE ++ L DA L S+K+ R + +M+G+L GTG ++
Sbjct: 1361 KRSSFEETVEILLDAALVSEKNICRGITENIMMGQLAPMGTGNIEI 1406
>UniRef50_Q7T6X5 Cluster: DNA-directed RNA polymerase subunit 1; n=1;
Acanthamoeba polyphaga mimivirus|Rep: DNA-directed RNA
polymerase subunit 1 - Mimivirus
Length = 1495
Score = 65.3 bits (152), Expect = 1e-09
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQ 456
YG+E A IKE G + +H+ ++AD +T+ G P++R G + + P
Sbjct: 1351 YGVEAARTAFIKEFTAAIESSGGFSNYQHIEILADAITHMGGLIPVNRHGANKLDTDPFS 1410
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 309
+ SFE ++ L A + + D +RS S+ +MVG L GTG FDL H
Sbjct: 1411 RASFEKTVEQLLAAAVFGESDHMRSVSARIMVGALINGGTGCFDLLLDH 1459
>UniRef50_Q9AXN0 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase -
Glaucosphaera vacuolata
Length = 1746
Score = 64.9 bits (151), Expect = 2e-09
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE ++ EI+ V + G V+ RHL ++AD MT G ++R G+ + L
Sbjct: 1364 TLGIEGVRAALLNEIRGVISFDGAYVNYRHLAILADIMTCRGHIMSITRHGINRVETGAL 1423
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+ SFE + L +A + + DD++ + +M+G++ GTG F L
Sbjct: 1424 MRCSFEETADILLEAAMYGEVDDMKGVAENIMLGQMAPVGTGEFGL 1469
>UniRef50_Q8PUR2 Cluster: DNA-directed RNA polymerase subunit A'';
n=3; Methanosarcina|Rep: DNA-directed RNA polymerase
subunit A'' - Methanosarcina mazei (Methanosarcina
frisia)
Length = 408
Score = 64.9 bits (151), Expect = 2e-09
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEA-SSSPLQQ 453
GIE A IIKE + G+TVD RH+ L+AD MT +G + + R G+ +S +
Sbjct: 279 GIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTSDGEVKQIGRHGISGEKASVFAR 338
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 333
+FE ++ L DA + D L+ + ++VG+ R GTG
Sbjct: 339 AAFEVTVNHLLDAGMRGYVDQLQGVTENIIVGQPIRMGTG 378
>UniRef50_O28390 Cluster: DNA-directed RNA polymerase subunit A'';
n=7; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit A'' - Archaeoglobus fulgidus
Length = 380
Score = 64.9 bits (151), Expect = 2e-09
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEA-SSSPLQQ 453
GIE A II+E + G+ VD RH+ L+AD MT +G + R G+ S L +
Sbjct: 269 GIEAARNAIIREALDTLEEQGLEVDVRHIMLVADVMTADGELRQIGRHGVAGEKQSILAR 328
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+FE ++ L DA + ++D LR + ++VG+ + GTG +L
Sbjct: 329 AAFEMTVNNLLDAAVRGEEDHLRGITENIIVGQPIKLGTGDVEL 372
>UniRef50_A5K7T9 Cluster: DNA-directed RNA polymerase; n=1; Plasmodium
vivax|Rep: DNA-directed RNA polymerase - Plasmodium vivax
Length = 1946
Score = 64.5 bits (150), Expect = 2e-09
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME-ASSSPLQQ 453
GIE A II EI+ Y I +D RH+ L+AD M + G ++R G++ A S L
Sbjct: 1819 GIEAARVTIINEIKKCVEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQKARHSTLML 1878
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHLYGK 297
SFE + L + +D++ + S ++VG+ GTG F L + + + +
Sbjct: 1879 ASFEETNEHLFVSSFFKNRDEINNISESIIVGKNIPIGTGAFQLLYDYKFNR 1930
>UniRef50_A2DEX5 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA polymerase
- Trichomonas vaginalis G3
Length = 1657
Score = 64.5 bits (150), Expect = 2e-09
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
G+E A VII EI NV Y + +D RHL L++D MT G ++R G+ + S S L+
Sbjct: 1229 GVEAARSVIISEITNVMKNYSLNIDRRHLMLLSDLMTIRGKVLGVTRHGLAKTSVSSLKL 1288
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE++ L +A ++ + S+ +++G G+G+ D+
Sbjct: 1289 ASFETTQEHLFNAAFHNVDEVANGVSASVILGNFAPIGSGMIDV 1332
>UniRef50_Q0V3B7 Cluster: DNA-directed RNA polymerase; n=2;
Ascomycota|Rep: DNA-directed RNA polymerase -
Phaeosphaeria nodorum (Septoria nodorum)
Length = 1467
Score = 64.5 bits (150), Expect = 2e-09
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEAS-SSPLQQ 453
GIE A I++EI V + +DPRH+ L+AD MT+ G ++R G++ + S LQ
Sbjct: 1341 GIEAARATIMREISAVMG--NMDIDPRHMALLADVMTFKGDVYGITRFGLQKTRDSVLQL 1398
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHLYGKVNLSK 282
SFE + L +A K D + S +++G+ + GTG + G+ +L+K
Sbjct: 1399 ASFEKTPDHLFEAAARGKTDTIDGVSESIIMGQSMKLGTGALQVVRPLKLGEEDLAK 1455
>UniRef50_P04050 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=225; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1733
Score = 64.5 bits (150), Expect = 2e-09
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSS-PLQQ 453
GIE + KE+ NV G V+ RH+ L+ D MT G ++R G S++ L +
Sbjct: 1340 GIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMR 1399
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A +++ DD R S +++G++ GTG FD+
Sbjct: 1400 CSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDV 1443
>UniRef50_Q18EX7 Cluster: DNA-directed RNA polymerase subunit A'';
n=1; Haloquadratum walsbyi DSM 16790|Rep: DNA-directed
RNA polymerase subunit A'' - Haloquadratum walsbyi
(strain DSM 16790)
Length = 637
Score = 64.1 bits (149), Expect = 3e-09
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGIT-VDPRHLTLIADYMTYNGIFEPMSRKGMEASS-SPLQ 456
GIE A + II E G+ V+ RHL L+AD MT G E + R G+ S S L
Sbjct: 509 GIEAARESIINETMETLREQGLDDVNVRHLMLVADIMTNRGEIESIGRHGISGSKDSVLA 568
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
+ +FE ++ L DA ++ ++DDL ++VG+ GTG DL+
Sbjct: 569 RAAFEVTVNHLLDAAVHGEEDDLEGVIENVIVGKPVAIGTGDVDLR 614
>UniRef50_Q8ZYQ7 Cluster: DNA-directed RNA polymerase subunit A'';
n=5; Thermoproteaceae|Rep: DNA-directed RNA polymerase
subunit A'' - Pyrobaculum aerophilum
Length = 379
Score = 64.1 bits (149), Expect = 3e-09
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEAS-SSPLQQ 453
GIE ++ +EI+ V G+ VD RH+ L+AD MT++G P+ R G+ S SPL +
Sbjct: 272 GIEATRALVAQEIKRVLEEQGLDVDIRHMYLVADAMTWSGRLRPIGRHGVVGSKESPLAR 331
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+FE ++ L +A + + + + ++ G+ GTG+ L
Sbjct: 332 AAFEVTVKTLIEASVRGEDELFKGVVESIIAGKYVPIGTGIVRL 375
>UniRef50_Q58446 Cluster: DNA-directed RNA polymerase subunit A'' (EC
2.7.7.6) [Contains: Mja rpoA2 intein (Mja rpol A''
intein)]; n=7; Methanococcales|Rep: DNA-directed RNA
polymerase subunit A'' (EC 2.7.7.6) [Contains: Mja rpoA2
intein (Mja rpol A'' intein)] - Methanococcus jannaschii
Length = 859
Score = 64.1 bits (149), Expect = 3e-09
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEA-SSSPLQQ 453
GIE A II E++N G+ VD RHL L+AD MT +G +P+ R G+ S L +
Sbjct: 742 GIEAARNAIINEMRNTLEQQGLEVDIRHLMLVADIMTADGEVKPIGRHGVAGEKGSVLAR 801
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+FE ++ L A D L+ ++VG+ GTG +L
Sbjct: 802 AAFEETVKHLYAAAERGDVDKLKGVIENVIVGKPIYLGTGCVEL 845
>UniRef50_A5DCV3 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=193; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1579
Score = 63.7 bits (148), Expect = 4e-09
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE + KEI NV G V+ RH+ L+ D MT G ++R G+ A + L +
Sbjct: 1174 GIEATRSALFKEILNVIAFDGSYVNYRHMALLVDVMTARGHLMAITRHGINRADTGALMR 1233
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A ++ DD S +++G+L GTG FD+
Sbjct: 1234 CSFEETVEILLEAGAAAELDDCHGISENVVLGQLAPLGTGAFDV 1277
>UniRef50_Q7RQQ6 Cluster: DNA-directed RNA polymerase; n=9; Plasmodium
(Vinckeia)|Rep: DNA-directed RNA polymerase - Plasmodium
yoelii yoelii
Length = 2020
Score = 63.3 bits (147), Expect = 5e-09
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME-ASSSPLQQ 453
GIE A II EI+ Y I +D RH+ L+AD M + G ++R G++ A S L
Sbjct: 1891 GIEAARVTIINEIKKCIEAYSIDIDIRHIMLLADIMAFTGEILGINRFGIQKARQSTLML 1950
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 309
SFE + L + D++ + S ++VG+ GTG F+L + +
Sbjct: 1951 ASFEETNEHLFVSSFFKNNDEINNISESIIVGKNIPIGTGSFELLYDY 1998
>UniRef50_Q8TXI9 Cluster: DNA-directed RNA polymerase largest
subunit, the N-terminal part; n=1; Methanopyrus
kandleri|Rep: DNA-directed RNA polymerase largest
subunit, the N-terminal part - Methanopyrus kandleri
Length = 429
Score = 62.9 bits (146), Expect = 6e-09
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG----MEASSSP 462
G+E II++++ V+ GI+VDPRH LI+D M++ G + G ME SP
Sbjct: 307 GVEAGRNAIIEQLEEVYESQGISVDPRHFMLISDMMSFWGELRSVRSVGGYSVMELKGSP 366
Query: 461 LQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
L + +FE L + + ++LR ++VG+ GTG +L
Sbjct: 367 LTKAAFEYVSRVLTETATSGDVEELRGVLENIIVGKPVPVGTGTVEL 413
>UniRef50_Q9VXP9 Cluster: DNA-directed RNA polymerase; n=4;
Diptera|Rep: DNA-directed RNA polymerase - Drosophila
melanogaster (Fruit fly)
Length = 1304
Score = 62.5 bits (145), Expect = 8e-09
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A +I+ EI V +G++VD RH+ L+A MT G ++R G+ + S
Sbjct: 1171 TLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVF 1230
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 309
SFE + L DA + D + S +++G GTG+F L H
Sbjct: 1231 NLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQQH 1280
>UniRef50_Q9YAU2 Cluster: DNA-directed RNA polymerase subunit A'';
n=19; Archaea|Rep: DNA-directed RNA polymerase subunit
A'' - Aeropyrum pernix
Length = 407
Score = 62.5 bits (145), Expect = 8e-09
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASS-SPLQQ 453
GIE A II+EI+ V G+ VD RHL LIAD MT+ G + R G+ SPL +
Sbjct: 297 GIEAARTAIIEEIKRVLEDSGLDVDIRHLMLIADLMTWPGYVRQIGRLGVVGEKPSPLAR 356
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 333
+FE ++ L +A + ++++ + ++ G R GTG
Sbjct: 357 AAFEVTVKQLYEAAVWGEEEEFAGVTENIIAGLPPRVGTG 396
>UniRef50_Q84KP6 Cluster: DNA-directed RNA polymerase; n=3;
Eukaryota|Rep: DNA-directed RNA polymerase -
Cyanidioschyzon merolae (Red alga)
Length = 1819
Score = 61.7 bits (143), Expect = 1e-08
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE A + + E+ V + G +V RHL L+ + MT G+ P+SR G+ + PL +
Sbjct: 1390 GIEAARQALYNEMYAVLSFDGSSVGYRHLALLVEVMTCRGMLIPVSRFGINRLETGPLMR 1449
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+FE ++ L A +D S +++G+ + GTG F L
Sbjct: 1450 CTFEETVEILATAATFGVRDACEGVSQAVILGQRAKVGTGAFSL 1493
>UniRef50_P29158 Cluster: DNA-directed RNA polymerase subunit A'';
n=1; Thermococcus celer|Rep: DNA-directed RNA polymerase
subunit A'' - Thermococcus celer
Length = 393
Score = 61.7 bits (143), Expect = 1e-08
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEA-SSSPLQQ 453
GIE A II EI G+ VD RH+ L+AD MT +G+ P+ R G+ +S L +
Sbjct: 279 GIEAARNAIIDEILKTMEEQGLEVDVRHIMLVADMMTLDGVIRPIGRHGIVGEKASVLAR 338
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+FE + L +A D L +++G+ GTG L
Sbjct: 339 AAFEITTQHLFEAAERGAVDPLNGVVENVLIGQPVPVGTGTVKL 382
>UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=6; Eukaryota|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Plasmodium falciparum
Length = 2339
Score = 61.7 bits (143), Expect = 1e-08
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME-ASSSPLQQ 453
GIE A II EI+ Y I +D RH+ L+AD M + G ++R G++ A S L
Sbjct: 2209 GIEAARITIINEIKKCVEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQKARQSTLML 2268
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 309
SFE + L + D++ + S ++VG+ GTG F L + +
Sbjct: 2269 ASFEETNEHLFVSSFFKNVDEINNISESIIVGKNIPIGTGAFQLLYDY 2316
>UniRef50_Q03586 Cluster: DNA-directed RNA polymerase subunit A'';
n=6; Thermoplasmatales|Rep: DNA-directed RNA polymerase
subunit A'' - Thermoplasma acidophilum
Length = 508
Score = 61.3 bits (142), Expect = 2e-08
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEA-SSSPLQQ 453
GIE A I+ E G+ VD RHL L+AD MT++G + R G+ SS L +
Sbjct: 395 GIEAARNAILNEALRTLQEQGLNVDVRHLMLVADMMTFSGSVRAVGRTGISGRKSSVLAR 454
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+FE + L A + + D L + ++VG+ GTG D+
Sbjct: 455 AAFEITTKHLLRAGIMGEVDKLAGVAENIIVGQPITLGTGAVDI 498
>UniRef50_Q3LWE3 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1510
Score = 60.9 bits (141), Expect = 3e-08
Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASS-SPLQ 456
+GIE A + IKE++ + ++ H++ +ADY T G ++R G++ S S LQ
Sbjct: 1344 FGIEAARLLFIKELKKILEFDNSYINQHHISCLADYSTNTGRPNAINRYGLKVQSLSTLQ 1403
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHLYGKVNLSKS 279
+ SFE ++ L A + +K D S + ++ G+ GTG +++ + + +V +SK+
Sbjct: 1404 ECSFEETMKTLLKASVETKVDRFSSITETIIFGKESNFGTGFSNMKKTK-FQEVQISKN 1461
>UniRef50_Q27095 Cluster: DNA-directed RNA polymerase; n=2;
Trichomonas vaginalis|Rep: DNA-directed RNA polymerase -
Trichomonas vaginalis
Length = 1661
Score = 60.5 bits (140), Expect = 3e-08
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE A + E+ + G ++ RHL L+AD MT G+ P+SR G+ + + L +
Sbjct: 1357 GIEAARHSLSYEMMLIMEKAGAALNRRHLDLLADTMTQYGVLYPVSRHGINKTPTGTLMR 1416
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
S+E + DA + S+ D +R SS ++ G+ R GTG+ ++
Sbjct: 1417 ASYEMTNDVFFDAAVFSEIDYMRDVSSNIIAGKPSRAGTGIVEV 1460
>UniRef50_Q5C3D2 Cluster: SJCHGC05045 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC05045 protein - Schistosoma
japonicum (Blood fluke)
Length = 367
Score = 59.3 bits (137), Expect = 8e-08
Identities = 26/59 (44%), Positives = 37/59 (62%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPL 459
TYGIE A + +E+ VF YGI VD RHL+LI DY+T G++ +R+ + + S L
Sbjct: 309 TYGIEAARAALQREVSGVFGHYGIHVDSRHLSLIGDYLTKLGVYNAFNRRSLSSHPSVL 367
>UniRef50_O96452 Cluster: DNA-directed RNA polymerase; n=1;
Antonospora locustae|Rep: DNA-directed RNA polymerase -
Antonospora locustae (Nosema locustae)
Length = 1553
Score = 58.4 bits (135), Expect = 1e-07
Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE + I++E++NV G V+ RHL L+ D MT G+ ++R G A++ L++
Sbjct: 1276 GIEAVRECILRELRNVIEAEGSYVNFRHLYLLCDVMTLKGL-RGITRHGANRAATGALKR 1334
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 333
SFE ++ L +A ++++ R + +M+G+L GTG
Sbjct: 1335 CSFEETVEILLEASCFAERNYCRGVTENIMLGQLAPIGTG 1374
>UniRef50_O27126 Cluster: DNA-directed RNA polymerase subunit A'';
n=4; Methanobacteriaceae|Rep: DNA-directed RNA
polymerase subunit A'' - Methanobacterium
thermoautotrophicum
Length = 451
Score = 58.0 bits (134), Expect = 2e-07
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEA-SSSPLQQ 453
GIE A II E + G+TVD RH+ L+AD MT +G + + R G+ +S L +
Sbjct: 342 GIEAARNAIIHEAKRTMEEQGLTVDIRHIMLVADMMTADGSVKSIGRHGISGEKASVLAR 401
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 333
SFE + L A + + D L +++G+ GTG
Sbjct: 402 ASFEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTG 441
>UniRef50_P25202 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=2; Giardia intestinalis|Rep: DNA-directed RNA
polymerase III subunit RPC1 - Giardia lamblia (Giardia
intestinalis)
Length = 1741
Score = 58.0 bits (134), Expect = 2e-07
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME--ASSSP 462
T GIE A I EI+ + +G+ VD RH+ L+AD M + G +R G+ + S
Sbjct: 1547 TLGIEAAVATISNEIKACMDSHGMAVDMRHIRLLADIMCFRGRVLGFTRFGLTKMKADSV 1606
Query: 461 LQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+ SFE + L +A L +K D+ + +++G+ GTG F L
Sbjct: 1607 IMLASFEKTGEHLFNAALGNKVDEANGVTESIILGKPMSMGTGSFSL 1653
>UniRef50_Q196X0 Cluster: DNA-directed RNA polymerase; n=1; Aedes
taeniorhynchus iridescent virus|Rep: DNA-directed RNA
polymerase - Aedes taeniorhynchus iridescent virus
Length = 1377
Score = 57.2 bits (132), Expect = 3e-07
Identities = 32/106 (30%), Positives = 54/106 (50%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
T GIE A + IKE+ + G VD H+ L AD +T+ G + ++R M P
Sbjct: 1228 TLGIEAAREFRIKELVEII---GTGVDLSHIKLRADRLTFTGTIQSLTRYTMRGEK-PFS 1283
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
++ FE + +++ DDL S+ +M G+ + GT +FD++
Sbjct: 1284 KVGFEEIMENFYKTARDAEVDDLTGVSASIMCGKRAKVGTSMFDIK 1329
>UniRef50_Q91FI1 Cluster: 343L; n=1; Invertebrate iridescent virus
6|Rep: 343L - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 462
Score = 56.4 bits (130), Expect = 5e-07
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
T+GIE + +I+E++ V + VD H+ L+ + MTY+G EP++R M SPL
Sbjct: 329 TFGIEATKQFLIQELKTVMD----GVDICHIKLLVERMTYSGTIEPITRYTMRNDESPLS 384
Query: 455 QMSFESSL-LFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+ SFE S FLK A + + S+ ++ G+ GT + D+
Sbjct: 385 RASFEESFETFLKAAKF-KEIEPFTGVSASVIGGKKTEVGTYMCDI 429
>UniRef50_Q1L5Y1 Cluster: DNA-directed RNA polymerase; n=1;
Ceratopteris thalictroides|Rep: DNA-directed RNA
polymerase - Ceratopteris thalictroides
Length = 836
Score = 56.4 bits (130), Expect = 5e-07
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSS--- 465
+GIE A+ I ++++ +++ TV H+ +I + MT++G ++ G E S+S
Sbjct: 718 FGIEAAHNCIYHRLKSILSMFDKTVYDHHVIVITELMTHSGNVIGLNAAGFREISNSLHI 777
Query: 464 --PLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV-FDLQHSHLYGKV 294
P+ Q F+SS+ ++ A L K DDL + + G+L GTG FD+ L+ KV
Sbjct: 778 SAPITQSLFQSSIKHIQTAALRGKCDDLSGTLAAICWGKLAPVGTGAKFDI----LWRKV 833
Query: 293 NLS 285
L+
Sbjct: 834 ELT 836
>UniRef50_Q7Z755 Cluster: POLR3A protein; n=5; Metazoa|Rep: POLR3A
protein - Homo sapiens (Human)
Length = 162
Score = 54.4 bits (125), Expect = 2e-06
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A II EIQ +G+++D RH+ L++D MTY G ++R G+ + S L
Sbjct: 73 TLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVL 132
Query: 458 QQMSFESSLLFLKDAILNSKKDDL 387
SFE + L DA +KD +
Sbjct: 133 MLASFEKTADHLFDAAYFGQKDSV 156
>UniRef50_A6SJ73 Cluster: DNA-directed RNA polymerase; n=2;
Sclerotiniaceae|Rep: DNA-directed RNA polymerase -
Botryotinia fuckeliana B05.10
Length = 1774
Score = 54.4 bits (125), Expect = 2e-06
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEP 498
YG+E I++E+ +VF+ + I VD RHL LIADYMT +G F P
Sbjct: 1570 YGVEACRSTIVQELHSVFDGHAIAVDMRHLKLIADYMTQSGGFSP 1614
>UniRef50_A4GI99 Cluster: RpoA2 RNA polymerase subunit A''; n=1;
uncultured marine bacterium HF10_29C11|Rep: RpoA2 RNA
polymerase subunit A'' - uncultured marine bacterium
HF10_29C11
Length = 287
Score = 54.0 bits (124), Expect = 3e-06
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASS-SPLQQ 453
GIE A + II E+++ + VD RHL ++AD MT G + R G+ + S L +
Sbjct: 178 GIEAARQAIINELESTLLSARLEVDVRHLLMVADVMTSEGEVRAIGRHGVSGTKHSILAR 237
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+FE ++ L A + + D L + ++VG+ GTG +L
Sbjct: 238 AAFEVTVNHLLKAGIIGETDRLTGVAENIIVGQPISLGTGSVEL 281
>UniRef50_A5ATH2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 814
Score = 53.6 bits (123), Expect = 4e-06
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRK-GMEASSSPL 459
TYG+E IKE+ N+ N YG+ + H + I D+M ++ ++PM+R G+ S S
Sbjct: 650 TYGVEATRATXIKEVFNISNAYGVKDNIHHXSEIVDFMIHSDGYQPMNRHGGITESVSLF 709
Query: 458 QQMSFE-SSLLFLKDAILNSK 399
+M+FE +S ++D ++ K
Sbjct: 710 NKMTFEIASKFIVQDGWIDGK 730
>UniRef50_Q23692 Cluster: RNA polymerase II, large subunit; n=1;
Crithidia fasciculata|Rep: RNA polymerase II, large
subunit - Crithidia fasciculata
Length = 295
Score = 52.0 bits (119), Expect = 1e-05
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = -3
Query: 542 TLIADYMTYNGIFEPMSRKGMEAS--SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSC 369
T++ D M G +SR G+ S S PL + SFE ++ L A +KD +R S+
Sbjct: 2 TILVDTMLPRGYLMAVSRTGINRSETSGPLMRSSFEETVKVLMTAAAFGEKDPVRGVSAN 61
Query: 368 LMVGRLCRTGTGVFDL 321
L++G R GTG+FDL
Sbjct: 62 LVLGNQARIGTGLFDL 77
>UniRef50_Q83066 Cluster: DNA-directed RNA polymerase; n=3;
Lymphocystivirus|Rep: DNA-directed RNA polymerase - Fish
lymphocystis disease virus (FLDV)
Length = 1199
Score = 51.6 bits (118), Expect = 2e-05
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = -3
Query: 569 GITVDPRHLTLIADYMTYNGIFEPMSRKGMEASS-SPLQQMSFESSLLFLKDAILNSKKD 393
G + P H+ L+ D MTY G P+ R M PL + +FE SL L ++ + + D
Sbjct: 1103 GEEIYPEHIQLLVDQMTYKGKPMPIDRYTMRTHQVGPLSRAAFEESLDILVNSAVIGETD 1162
Query: 392 DLRSASSCLMVGRLCRTGTGVFDLQHSHLYGK 297
L S+C++ G+ GTG L + Y K
Sbjct: 1163 TLNGVSACVIAGKKTFIGTGFPKLIYDPTYLK 1194
>UniRef50_Q6IUR3 Cluster: DNA-directed RNA polymerase; n=3; Entamoeba
histolytica|Rep: DNA-directed RNA polymerase - Entamoeba
histolytica
Length = 1636
Score = 51.2 bits (117), Expect = 2e-05
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE + E+ + + G V+ RHL L+AD MT+ G +P +R G+ + + +
Sbjct: 1371 GIEAGRTQLEAEL--IKTLSGSYVNFRHLALMADVMTFTGRIQPFNRMGLSRGRAGVITR 1428
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 327
SFE +L + A S+ D L S +++G+ GTG F
Sbjct: 1429 ASFEQTLEQFRRAAAFSESDILNGISQNILMGQRTVAGTGAF 1470
>UniRef50_Q2N0X2 Cluster: RNA polymerase III large subunit; n=1;
Monosiga brevicollis|Rep: RNA polymerase III large
subunit - Monosiga brevicollis
Length = 233
Score = 49.6 bits (113), Expect = 6e-05
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A +I+ ++Q V + YGI ++PRH L++D MT+ G ++R G+ + S
Sbjct: 166 TLGIEAARSIIMDQVQYVMSNYGIHINPRHTMLMSDLMTFKGEVLGITRFGIAKMKESVF 225
Query: 458 QQMSFESS 435
SFE +
Sbjct: 226 MLASFEKT 233
>UniRef50_Q8MUU2 Cluster: DNA-directed RNA polymerase; n=4; Giardia
intestinalis|Rep: DNA-directed RNA polymerase - Giardia
lamblia (Giardia intestinalis)
Length = 2076
Score = 48.8 bits (111), Expect = 1e-04
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT---YNGIFEPMSRKGMEASSSP- 462
GIE A + IK+I+ + + + H ++AD M+ N ++R GM+A+++
Sbjct: 1700 GIEAARALFIKQIRATLDKVDLNI--HHYLILADIMSSRPQNNKMISINRYGMQATNTGV 1757
Query: 461 LQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
L Q +FE + A D L+S SSC+++G+ GTG FDL
Sbjct: 1758 LAQATFERPGATVLKAAAFGVVDPLKSVSSCVVMGKQGDFGTGCFDL 1804
>UniRef50_Q06VH1 Cluster: RNA polymerase II; n=1; Trichoplusia ni
ascovirus 2c|Rep: RNA polymerase II - Trichoplusia ni
ascovirus 2c
Length = 453
Score = 47.2 bits (107), Expect = 3e-04
Identities = 30/99 (30%), Positives = 55/99 (55%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YGIE K II ++ N +V +TL+A+ +T++G EP +R M ++ SPL +
Sbjct: 294 YGIE-VTKAIIIDMSNA--CLSESVPKAIITLMANRLTHSGHVEPFTRFTMRSNISPLAK 350
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGT 336
+ FE L ++A L + + ++ SS ++ G + + G+
Sbjct: 351 IGFEECLEGCRNAGLFKESERFKTVSSSIICGIMPKVGS 389
>UniRef50_Q9LQ02 Cluster: DNA-directed RNA polymerase; n=1;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1453
Score = 46.8 bits (106), Expect = 4e-04
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG------MEAS 471
YGI+ + + +++ + G + HL L+AD ++ G F ++ KG +E++
Sbjct: 1154 YGIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGEFVALNAKGWSKQRQVEST 1213
Query: 470 SSPLQQMSFES-SLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 333
+P Q F S S FLK A +DDL+ + L G++ GTG
Sbjct: 1214 PAPFTQACFSSPSQCFLK-AAKEGVRDDLQGSIDALAWGKVPGFGTG 1259
>UniRef50_Q5YF58 Cluster: DNA-directed RNA polymerase; n=6;
Iridoviridae|Rep: DNA-directed RNA polymerase - Rock
bream iridovirus
Length = 1168
Score = 46.0 bits (104), Expect = 8e-04
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -3
Query: 569 GITVDPRHLTLIADYMTYNGIFEPMSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKD 393
G V H+ ++ D MT++G+ + R M + + P+ + +FE SL L + + ++D
Sbjct: 1080 GDDVHMAHIRVLVDRMTFSGLPTAVDRYTMRSCETGPISKATFEESLDILVSSAVRGERD 1139
Query: 392 DLRSASSCLMVGRLCRTGTG 333
+ +CL+ G++ GTG
Sbjct: 1140 NNTGVGACLVAGKMLPLGTG 1159
>UniRef50_Q1L5X6 Cluster: DNA-directed RNA polymerase; n=2;
lamiids|Rep: DNA-directed RNA polymerase - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum)
Length = 1138
Score = 46.0 bits (104), Expect = 8e-04
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASS----- 468
YGI+ A + + ++ + + G + P HL L AD +T G F P+S KG+
Sbjct: 845 YGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGV 904
Query: 467 -SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG-VFDLQHS 312
SP Q F + A DDL+ + L G+ GTG FD+ +S
Sbjct: 905 VSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYS 958
>UniRef50_A7QKE4 Cluster: Chromosome chr2 scaffold_112, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_112, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1360
Score = 44.8 bits (101), Expect = 0.002
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM------EAS 471
YGI+ K + +++ + G TV P HL L+A ++ G F ++ KGM +
Sbjct: 1063 YGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSI 1122
Query: 470 SSPLQQMSFES-SLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGT-GVFDLQHS 312
SSP Q F S F+K A + D+L + L G++ G+ G FD+ +S
Sbjct: 1123 SSPFMQGCFSSPGSCFIK-AGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYS 1176
>UniRef50_Q5DD92 Cluster: SJCHGC09439 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09439 protein - Schistosoma
japonicum (Blood fluke)
Length = 503
Score = 42.7 bits (96), Expect = 0.007
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = -3
Query: 497 MSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
++R G+ + L + SFE ++ L +A ++S+ D + S +M+G+L R GTG FDL
Sbjct: 3 ITRHGLNRLDTGALARCSFEETVDILMEAAIHSEYDPMAGVSETIMLGQLARIGTGCFDL 62
>UniRef50_Q01JX0 Cluster: DNA-directed RNA polymerase; n=5; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
(Rice)
Length = 1407
Score = 41.1 bits (92), Expect = 0.022
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME------A 474
+YGI+ A K ++ +++ + G + +HL ++AD ++ +G F +S +G++ +
Sbjct: 1107 SYGIDSAWKFFVESLRSTTDAIGRNIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLS 1166
Query: 473 SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGR-LCRTGTGVFDLQHS 312
SSP + F +A D+L + G+ C +G F + +S
Sbjct: 1167 ISSPFSEACFSRPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCTGSSGPFKILYS 1221
>UniRef50_Q20EX3 Cluster: DNA-directed RNA polymerase; n=1;
Oltmannsiellopsis viridis|Rep: DNA-directed RNA
polymerase - Oltmannsiellopsis viridis (Marine
flagellate)
Length = 1859
Score = 30.3 bits (65), Expect(2) = 0.023
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -3
Query: 626 IEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT 519
+E ++I++ + NV+ G+T+ +H+ +I MT
Sbjct: 1682 LERIQQIIVENVLNVYQSQGVTIADKHVEIIVRQMT 1717
Score = 29.9 bits (64), Expect(2) = 0.023
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = -3
Query: 518 YNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTG 339
Y + +++ ++ S + SF+ + L A + K D LR +++G+L G
Sbjct: 1755 YAPVLVGITKAALDIDKSFISAASFQETTRILSRAAIERKTDFLRGLKENVILGQLIPAG 1814
Query: 338 TG 333
TG
Sbjct: 1815 TG 1816
>UniRef50_Q6YHB9 Cluster: DNA-directed RNA polymerase; n=5;
Ranavirus|Rep: DNA-directed RNA polymerase - Ambystoma
tigrinum stebbensi virus
Length = 1294
Score = 40.3 bits (90), Expect = 0.038
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASS-SPL 459
T G+ A K + + +F+ G + P H+ L+ D M G P+ R M PL
Sbjct: 1156 TLGLAAAKKRLY---ELMFSCVGDNLYPAHIKLLTDRMMRRGRPTPIDRYTMRTCEVGPL 1212
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+ +FE SL L A ++ + A + + G R GTG L
Sbjct: 1213 SRAAFEESLDILTGAGCTAETEHCAGAGARVAAGLPVRAGTGYMGL 1258
>UniRef50_P48120 Cluster: DNA-directed RNA polymerase subunit beta'';
n=1; Cyanophora paradoxa|Rep: DNA-directed RNA polymerase
subunit beta'' - Cyanophora paradoxa
Length = 1265
Score = 28.3 bits (60), Expect(2) = 0.33
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = -3
Query: 626 IEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT 519
++ + ++ E+Q+V+ GI + +H+ +I MT
Sbjct: 1084 LQKIQQFLVSEVQSVYQSQGIDISDKHIEIIIKQMT 1119
Score = 27.9 bits (59), Expect(2) = 0.33
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -3
Query: 521 TYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRT 342
+Y I +++ + S + SF+ + L A + K D LR +++G L
Sbjct: 1159 SYTPILLGITKSSLNTQSF-ISAASFQETTRVLAKAAVEGKIDQLRGLKENVIIGNLIPA 1217
Query: 341 GTG 333
GTG
Sbjct: 1218 GTG 1220
>UniRef50_A5BZZ3 Cluster: DNA-directed RNA polymerase; n=1; Vitis
vinifera|Rep: DNA-directed RNA polymerase - Vitis
vinifera (Grape)
Length = 1393
Score = 36.7 bits (81), Expect = 0.47
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM 480
YGI+ K + +++ + G TV P HL L+A ++ G F ++ KGM
Sbjct: 1309 YGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGM 1359
>UniRef50_O78483 Cluster: DNA-directed RNA polymerase subunit beta'';
n=2; Cryptomonadaceae|Rep: DNA-directed RNA polymerase
subunit beta'' - Guillardia theta (Cryptomonas phi)
Length = 1286
Score = 31.5 bits (68), Expect(2) = 0.56
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = -3
Query: 521 TYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRT 342
TY I +++ + S + SF+ + L +A + K D LR +++GRL
Sbjct: 1161 TYCPILLGITKASLNTDSF-ISAASFQETTRVLTEAAIEGKADWLRGLKENVIIGRLIPA 1219
Query: 341 GTGVFDLQHSHLYGK 297
GTG H K
Sbjct: 1220 GTGFNAYNEQHKSSK 1234
Score = 23.8 bits (49), Expect(2) = 0.56
Identities = 7/36 (19%), Positives = 18/36 (50%)
Frame = -3
Query: 626 IEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT 519
++ ++ E+Q V+ + + +H+ +I MT
Sbjct: 1086 LQKVQTYLVDEVQKVYQSQNVDISDKHIEVIVRQMT 1121
>UniRef50_Q9CK92 Cluster: DNA-directed RNA polymerase subunit beta';
n=86; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Pasteurella multocida
Length = 1417
Score = 36.3 bits (80), Expect = 0.62
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = -3
Query: 488 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 309
K A+ S + SF+ + L +A + K+D+LR ++VGRL GTG H +
Sbjct: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGF--AYHQN 1368
Query: 308 LYGKVNLSKS*PPRHS 261
KV +S P + S
Sbjct: 1369 RQKKVVMSDEMPVKLS 1384
Score = 33.1 bits (72), Expect = 5.8
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGI 507
G+ + I+ E+Q V+ + G+ ++ +H+ +I M GI
Sbjct: 1225 GVHAVTEYIVNEVQEVYRLQGVKINDKHIEVIVRQMLRKGI 1265
>UniRef50_Q39KH4 Cluster: DNA-directed RNA polymerase subunit beta';
n=45; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta' - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 1414
Score = 36.3 bits (80), Expect = 0.62
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -3
Query: 488 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 330
K ++ S + SF+ + L +A + K+DDLR ++VGRL GTG+
Sbjct: 1317 KASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGL 1369
Score = 33.1 bits (72), Expect = 5.8
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 522
GIE ++ I+ E+Q+V+ + G+ ++ +H+ +I M
Sbjct: 1231 GIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQM 1266
>UniRef50_Q7VRP8 Cluster: DNA-directed RNA polymerase subunit beta';
n=16; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta' - Blochmannia floridanus
Length = 1420
Score = 36.3 bits (80), Expect = 0.62
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -3
Query: 488 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 333
K A+ S + SF+ + L ++ + KKDDLR ++VGRL GTG
Sbjct: 1322 KASLATESFISAASFQETTRVLTESSVAGKKDDLRGLKENVIVGRLIPAGTG 1373
>UniRef50_UPI0000F1D3E9 Cluster: PREDICTED: similar to Sperm
associated antigen 5; n=1; Danio rerio|Rep: PREDICTED:
similar to Sperm associated antigen 5 - Danio rerio
Length = 963
Score = 35.9 bits (79), Expect = 0.82
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = -1
Query: 310 TCMAKLICLSRDRRVIHRAFRSVEGAWLYGLKSFAFPIRDKLISSSSVEGVNFDS*QFSI 131
T + ++ CL D+ ++H + S++ A GL SF D ++ + G + + Q ++
Sbjct: 783 TALERIQCLEYDQEILHSLYNSIQ-AMRVGLNSFKSSTEDAILKMKQI-GASVTADQETL 840
Query: 130 TEYASXIQQ--PRXEDAEQRNERRMK 59
+ AS ++ R + QR E +MK
Sbjct: 841 SRQASQMKSLYGRYKGTLQRMEEKMK 866
>UniRef50_Q8G515 Cluster: DNA-directed RNA polymerase subunit beta';
n=68; Actinobacteridae|Rep: DNA-directed RNA polymerase
subunit beta' - Bifidobacterium longum
Length = 1345
Score = 35.9 bits (79), Expect = 0.82
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -3
Query: 488 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 330
K A+ S L SF+ + L +A L+ K DDL+ +++G+L GTG+
Sbjct: 1217 KASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIGKLIPAGTGL 1269
>UniRef50_Q9PQV5 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Ureaplasma parvum|Rep: DNA-directed RNA polymerase
subunit beta' - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 1305
Score = 35.5 bits (78), Expect = 1.1
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = -3
Query: 473 SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHLYGK 297
S S L SF+ + L DA S+KD L +++G L GTG+ D++ YG+
Sbjct: 1240 SGSFLSAASFQDTKKILTDAAARSQKDMLIGLKENVILGNLIPAGTGLKDVEEVIAYGE 1298
Score = 32.7 bits (71), Expect = 7.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT 519
GIE IIKE+Q V+ + GI + +++ +I +T
Sbjct: 1149 GIENVRHYIIKEVQKVYRMQGIEISDKYIEVIISQLT 1185
>UniRef50_Q82DQ4 Cluster: DNA-directed RNA polymerase subunit beta';
n=26; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Streptomyces avermitilis
Length = 1299
Score = 35.5 bits (78), Expect = 1.1
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -3
Query: 488 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 330
K A+ S L SF+ + L DA +N+K D L +++G+L GTG+
Sbjct: 1195 KASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGL 1247
>UniRef50_Q6F0L8 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Mollicutes|Rep: DNA-directed RNA polymerase subunit
beta' - Mesoplasma florum (Acholeplasma florum)
Length = 1254
Score = 35.5 bits (78), Expect = 1.1
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 491 RKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
+K S S L SF+ + L DAI+ ++D L +M+G L GTG+ ++
Sbjct: 1183 KKAPLKSESWLSSASFQDTARVLTDAIIKGREDKLEGLKENIMLGNLIPAGTGLTGIE 1240
>UniRef50_Q7VKL8 Cluster: DNA-directed RNA polymerase subunit beta';
n=685; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Haemophilus ducreyi
Length = 1420
Score = 35.1 bits (77), Expect = 1.4
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -3
Query: 488 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 333
K A+ S + SF+ + L +A + K+D+LR ++VGRL GTG
Sbjct: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362
>UniRef50_Q1ACN4 Cluster: DNA-directed RNA polymerase subunit beta'';
n=1; Chara vulgaris|Rep: DNA-directed RNA polymerase
subunit beta'' - Chara vulgaris (Common stonewort)
Length = 1412
Score = 29.1 bits (62), Expect(2) = 1.6
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -3
Query: 524 MTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCR 345
M Y I ++R + S + + SF+ + L A + + D L+ +++GRL
Sbjct: 1281 MFYKPILVGITRASLNTRSF-ISEASFQETTRVLTKAAIKGRTDWLKGLKENVILGRLIP 1339
Query: 344 TGTG 333
GTG
Sbjct: 1340 AGTG 1343
Score = 24.6 bits (51), Expect(2) = 1.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 626 IEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT 519
+E + ++ EIQ V+ G+ + +H+ +I MT
Sbjct: 1210 MERSKLDLVFEIQQVYRSQGVYICDKHIEIIVRQMT 1245
>UniRef50_Q1L5X9 Cluster: DNA-directed RNA polymerase; n=1; Marchantia
polymorpha|Rep: DNA-directed RNA polymerase - Marchantia
polymorpha (Liverwort)
Length = 1008
Score = 34.3 bits (75), Expect = 2.5
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME------ASS 468
G++ A V+++ ++ G ++ +HL L+AD+M Y+G + ++ G S
Sbjct: 766 GVDAARDVLLQRLELAA---GNSIGNKHLKLVADFMVYSGEVQGLTSYGYRDWMRSLKFS 822
Query: 467 SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG-VFDL 321
SP +F + + +A + + + G+ GTG VFDL
Sbjct: 823 SPFTAGAFRAPIKHFLEAGRKGATERFSGVLASSVFGKKVPLGTGAVFDL 872
>UniRef50_A5Z8Z4 Cluster: DNA-directed RNA polymerase; n=2;
Bacteria|Rep: DNA-directed RNA polymerase - Eubacterium
ventriosum ATCC 27560
Length = 1270
Score = 33.9 bits (74), Expect = 3.3
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -3
Query: 488 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 330
K A+SS L SF+ + L +A +N K D L +++G+L GTG+
Sbjct: 1162 KASLATSSFLSAASFQETTRVLTEAAINGKVDPLVGLKENVIIGKLIPAGTGM 1214
>UniRef50_A6YGE2 Cluster: DNA-directed RNA polymerase; n=1; Leptosira
terrestris|Rep: DNA-directed RNA polymerase - Leptosira
terrestris (Pleurastrum terrestre)
Length = 3576
Score = 33.9 bits (74), Expect = 3.3
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = -3
Query: 473 SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHLYGK 297
+ S L +SF+ + L A + K+D LR ++VG L TGTG F + GK
Sbjct: 3482 TESVLSAVSFQETTRGLSIAAFSRKRDFLRGIKERVIVGELIPTGTGYFATTENSGSGK 3540
>UniRef50_Q4UCH6 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 346
Score = 33.1 bits (72), Expect = 5.8
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -3
Query: 551 RHLTLIADYMTYNGIFEPMSRK-GMEASSSP-LQQMSFESSLLFLKDAILNSKKDDLR 384
R + + DYM YNG+ ++ G+ P + +++FE L LKD + KDDLR
Sbjct: 247 RTVVALWDYMLYNGLSSVLTVSLGLMWLLMPQITRLNFEGILTLLKDIKSSDSKDDLR 304
>UniRef50_O67763 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Aquificaceae|Rep: DNA-directed RNA polymerase
subunit beta' - Aquifex aeolicus
Length = 1574
Score = 33.1 bits (72), Expect = 5.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 522
GIE K ++KE+Q V+ + G+ ++ +H +I M
Sbjct: 1410 GIEELEKFLLKEVQMVYKLQGVDINDKHFEIIIKQM 1445
>UniRef50_Q7PCJ6 Cluster: DNA-directed RNA polymerase subunit beta'';
n=4; Eukaryota|Rep: DNA-directed RNA polymerase subunit
beta'' - Chlamydomonas reinhardtii
Length = 3120
Score = 33.1 bits (72), Expect = 5.8
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -3
Query: 518 YNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTG 339
Y I ++R +E S L SF+ + L A L KKD L+ +++G L G
Sbjct: 3053 YEPIVLGITRASLEVESF-LSAASFQQTTRVLSQAALYKKKDFLKGLKENIIIGNLIPAG 3111
Query: 338 TG 333
TG
Sbjct: 3112 TG 3113
>UniRef50_P60289 Cluster: DNA-directed RNA polymerase subunit beta'';
n=24; Spermatophyta|Rep: DNA-directed RNA polymerase
subunit beta'' - Amborella trichopoda
Length = 1373
Score = 33.1 bits (72), Expect = 5.8
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Frame = -3
Query: 623 EXANKVIIKE--IQNVFN---VYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPL 459
+ +KV++ E + NVF+ + G+ R + D + Y I ++R + S +
Sbjct: 1220 QITSKVLVSEDGMSNVFSPRELIGLLRAERIGRALEDDICYRAILLGITRASLNTQSF-I 1278
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFD-LQHSHLYGKVNL 288
+ SF+ + L A L S+ D L+ +++G + GTG + HS + ++L
Sbjct: 1279 SEASFQETTRVLAKAALRSRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSREHNNISL 1336
>UniRef50_Q0LJX1 Cluster: DNA-directed RNA polymerase, subunit
beta-prime; n=2; cellular organisms|Rep: DNA-directed RNA
polymerase, subunit beta-prime - Herpetosiphon
aurantiacus ATCC 23779
Length = 1543
Score = 32.7 bits (71), Expect = 7.6
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 488 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 330
K ++ S L SF+ + L +A +N K D LR +++G+L GTG+
Sbjct: 1393 KASLSTDSFLSAASFQETTRVLTEAAVNGKIDYLRGLKENVVIGKLIPAGTGM 1445
>UniRef50_A1HGA7 Cluster: DNA repair exonuclease-like protein; n=7;
Burkholderiaceae|Rep: DNA repair exonuclease-like
protein - Ralstonia pickettii 12J
Length = 470
Score = 32.7 bits (71), Expect = 7.6
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 487 FRLIGSKIPLYVM*SAMRVKWRGSTVIP*TLNTFCISFMMTLLAXSMP 630
FRLIGS+ P+YV +V GST +P F + + TLL P
Sbjct: 97 FRLIGSRHPVYVADRIHQVALVGSTFLPSAGPLFTVEELETLLQEGTP 144
>UniRef50_Q1KVX8 Cluster: DNA-directed RNA polymerase; n=1;
Scenedesmus obliquus|Rep: DNA-directed RNA polymerase -
Scenedesmus obliquus
Length = 2552
Score = 32.7 bits (71), Expect = 7.6
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = -3
Query: 518 YNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTG 339
Y + ++R +E S L SF+ + L A ++ KKD L+ ++VG L +G
Sbjct: 2484 YEPVVLGITRSSLEVDSF-LSASSFQQTTKILALASISRKKDFLKGLKENILVGNLMPSG 2542
Query: 338 TGVFDLQ 318
TG L+
Sbjct: 2543 TGYMVLR 2549
>UniRef50_Q7VJ82 Cluster: Bifunctional DNA-directed RNA polymerase
subunit beta-beta' (EC 2.7.7.6) [Includes: DNA-directed
RNA polymerase subunit beta (Transcriptase subunit beta)
(RNA polymerase subunit beta); DNA- directed RNA
polymerase subunit beta' (Transcriptase subunit beta')
(RNA polymerase beta')]; n=246; cellular organisms|Rep:
Bifunctional DNA-directed RNA polymerase subunit
beta-beta' (EC 2.7.7.6) [Includes: DNA-directed RNA
polymerase subunit beta (Transcriptase subunit beta) (RNA
polymerase subunit beta); DNA- directed RNA polymerase
subunit beta' (Transcriptase subunit beta') (RNA
polymerase beta')] - Helicobacter hepaticus
Length = 2894
Score = 32.7 bits (71), Expect = 7.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -3
Query: 473 SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 309
S S + SF+ + L +A + +KKD L +++GR+ GTG++ + H
Sbjct: 2825 SDSIISAASFQETTKVLTEASIAAKKDTLDDLKENVVLGRMIPVGTGLYKNKKFH 2879
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,454,255
Number of Sequences: 1657284
Number of extensions: 10999488
Number of successful extensions: 29476
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 28593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29387
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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