Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F15
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 114 1e-26
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 76 4e-15
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 69 6e-13
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 29 0.43
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.0
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 27 3.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.0
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 5.2
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 25 6.9
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 25 6.9
SPBC1683.10c |pcl1||ferrous iron transporter Pcl1|Schizosaccharo... 25 6.9
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 114 bits (274), Expect = 1e-26
Identities = 53/104 (50%), Positives = 73/104 (70%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YG+E A I+ E+ +VF VYGI VDPRHL+LIADYMT+ G ++ +R G+E ++SP +
Sbjct: 1576 YGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMGIEYNTSPFAK 1635
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
MSFE++ FL +A L DDL + SS L+VGR+ GTG FD+
Sbjct: 1636 MSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDI 1679
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 76.2 bits (179), Expect = 4e-15
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME-ASSSPLQQ 453
GIE ++KE++NV G V+ RHL L+ D MT G ++R G+ A + L +
Sbjct: 1346 GIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMR 1405
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L DA + +KDD + S +M+G+L GTG FD+
Sbjct: 1406 CSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPMGTGAFDI 1449
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 68.9 bits (161), Expect = 6e-13
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE A II EI +G+TVDPRH+ L+ D MT G ++R G+ + S L
Sbjct: 1273 GIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLAL 1332
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE + L +A KD + S C+++G+L GT VF L
Sbjct: 1333 ASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQL 1376
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 29.5 bits (63), Expect = 0.43
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +3
Query: 147 LSKLTPSTDDDDIN-LSLMGKAKDFSPYSQAPSTDRKAR*MTRRSRLRQ--INFAIQVRV 317
L++ TD+ D LSL K+K S A D K R RR RLR+ + V
Sbjct: 75 LNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTSVVA 134
Query: 318 LQIENAGAGATQPAD-HQTARGGPEIIFLRIQYGVLQ 425
+ E A A T + + AR G +F ++ LQ
Sbjct: 135 VNAETAKALFTHERELRRIARRGVVQLFNAVRTAQLQ 171
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 171 DDDDINLSLMGKAKDFSPYSQAPSTDRKAR*MTRRSRLRQIN 296
DD+ L L+ KAKD TD+ +TR R++Q N
Sbjct: 777 DDEAAYLQLLDKAKDTRITHLLKQTDQYLENLTRAVRIQQSN 818
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 584 VFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLL 429
VF +Y T+ HL +I ++ + P+ + +++PL Q+SF S+L
Sbjct: 25 VFGLYSFTLI-LHLLVINRVDVFSLLHTPLPVNRSQQANAPLWQLSFSLSIL 75
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 488 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRS 381
K ++ +SS LQQ+ E + K++ L+ + +DLR+
Sbjct: 630 KQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRT 665
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.8 bits (54), Expect = 5.2
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Frame = -3
Query: 473 SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH----- 309
S P + SL +L D +SKK+ + S SS L + V +H H
Sbjct: 403 SMKPSNASNHTVSLGYLNDRPNHSKKNSVTSTSSSQFNNFLEQNQKAVRSARHRHYASLD 462
Query: 308 ---LYGKVNLSKS*PPRHSPCFSI 246
L+ NLSK+ HS FS+
Sbjct: 463 EQGLHSLRNLSKTSGMNHSADFSL 486
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 6.9
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 119 CVFCYTKLSTVKVDTFDR 172
C++CY+K+ V ++ DR
Sbjct: 240 CLYCYSKIDAVSLEEVDR 257
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 322 RSKTPVPVRHSRPTIRQLEADRRSSF 399
+SK PVPV+ S+ T QL+ + S++
Sbjct: 161 KSKVPVPVKISKGTAEQLKREVVSAY 186
>SPBC1683.10c |pcl1||ferrous iron transporter
Pcl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 190 KLISSSSVEGVNFDS*QFSITEYASXIQQPRXEDAEQRNERR 65
K+I + V G+ + ++ EY S Q EDA+ + ERR
Sbjct: 50 KVILITGVAGLMSGALSMAVGEYVSVSSQADLEDADLQLERR 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,061
Number of Sequences: 5004
Number of extensions: 44711
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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