Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F15
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 99 3e-21
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694... 73 2e-13
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 69 2e-12
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 66 3e-11
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 31 1.0
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439 29 4.1
10_04_0009 + 7477914-7478411 28 5.4
08_02_1271 - 25762750-25764276 28 5.4
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 28 7.1
07_01_0969 - 8123533-8123910 28 7.1
04_01_0253 - 3358090-3359052 28 7.1
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 28 7.1
12_02_0526 - 20032206-20033106,20034853-20035181 27 9.4
10_02_0161 + 6044625-6045098 27 9.4
03_04_0118 + 17418558-17419310 27 9.4
>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 98.7 bits (235), Expect = 3e-21
Identities = 48/106 (45%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
TYG+E A II E++ VF YGI VD RHL LIAD+MT++G + PMSR GM + S+SP
Sbjct: 1691 TYGVEAARATIIGEVKGVFGAYGIHVDMRHLNLIADFMTFDGGYRPMSRLGMGQFSTSPF 1750
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
+M+FE++ F+ +A + + D L S+ + +G+ + GTG F L
Sbjct: 1751 GKMTFETATKFIVEAASHGESDTLDGPSASVCLGKPVKVGTGSFGL 1796
>04_04_0348 + 24568834-24568904,24569019-24569148,24569310-24569459,
24569546-24569650,24569808-24570029,24570162-24570274,
24570371-24570470,24571125-24571325,24571401-24571549,
24571624-24571765,24571851-24571991,24572098-24572286,
24572622-24572835,24573198-24573291,24573671-24573905,
24574242-24574433,24574919-24575017,24575443-24575532,
24575709-24575912,24575994-24576269,24576974-24577096,
24577453-24577608,24577686-24577802,24577878-24577957,
24578173-24578377,24578485-24578687,24578882-24578933
Length = 1350
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A + II EIQ +G+ +D RH+ L+AD MTY G ++R G+ + SS L
Sbjct: 1226 TLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVL 1285
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
SFE + L +A + ++D + S C+++G + GTG+ ++
Sbjct: 1286 MLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVR 1332
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 69.3 bits (162), Expect = 2e-12
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSS-PLQQ 453
GIE + ++ E++ V + G V+ RHL ++ D MTY G ++R G+ + + PL +
Sbjct: 1398 GIEAVRRALLDELRVVISFDGSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMR 1457
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L DA + ++ D LR S +M+G+L GTG DL
Sbjct: 1458 CSFEETVDILLDAAVYAESDPLRGVSENIMLGQLAPIGTGGCDL 1501
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEAS-SSPLQQ 453
GIE + ++ E++ V + G V+ RHL ++ D MTY G ++R G+ + + PL +
Sbjct: 1360 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMR 1419
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 333
SFE ++ L DA + ++ D LR + +M+G+L GTG
Sbjct: 1420 CSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTG 1459
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 30.7 bits (66), Expect = 1.0
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ-Q 453
GI A +++ + + V HL L+A+ MT+ G + G +A+ L+ Q
Sbjct: 1223 GISCAFDQVVQRLSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNNAGYKATFRSLKVQ 1282
Query: 452 MSFESSLLF-----LKDAILNSKKDDLRSASSCLMVGRLCRTGTG 333
+ F S L + A D L S G+ +GTG
Sbjct: 1283 VPFTESTLITPMKCFEKAAEKCHSDSLGCVVSSCSWGKHAASGTG 1327
>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
Length = 1093
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 253 KHGE*RGGHDLDRLTLPYKCECCRSKTPVP 342
+ GE R +R+T CE C SK P P
Sbjct: 638 RRGEERRSEMEERMTFTKNCETCASKNPAP 667
>10_04_0009 + 7477914-7478411
Length = 165
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 326 RKRRCRCDTAGRPSDS*RRTG 388
R R CRCD G D RRTG
Sbjct: 14 RGRSCRCDAGGGDGDVGRRTG 34
>08_02_1271 - 25762750-25764276
Length = 508
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 386 GDHLS*NSIWRPSRTKATIRMTFAVTATKTPPFPSG 493
G+H + +W P+R +A R+ V TKT SG
Sbjct: 258 GEHEFGDVVWYPARGEAVFRIDDRVATTKTNTISSG 293
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 199 IRDKLISSSSVEGVNFDS*QFSITEYASXIQQPRXEDAEQRNERRMK 59
+RDK+I+SSS EGVN S+T S + P E ++K
Sbjct: 212 LRDKIIASSSFEGVNTG----SLTSTLSGMNLPTNSAKENTEYNQLK 254
>07_01_0969 - 8123533-8123910
Length = 125
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 326 RKRRCRCDTAGRPSDS*RRTG 388
R R CRCD G D RRTG
Sbjct: 14 RGRPCRCDAGGGDGDVGRRTG 34
>04_01_0253 - 3358090-3359052
Length = 320
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 326 RKRRCRCDTAGRPSDS*RRTG 388
R R CRCD G D RRTG
Sbjct: 100 RGRPCRCDAGGGDGDVGRRTG 120
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -3
Query: 536 IADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVG 357
+ D+ T +G M SS + MSF S + LKD+ L K +R AS+ +
Sbjct: 2405 LPDWCTRHGALLTFCSISMHCSSKLCRSMSFPSIVDLLKDS-LKDDKFPVREASTKTLGR 2463
Query: 356 RLC 348
LC
Sbjct: 2464 LLC 2466
>12_02_0526 - 20032206-20033106,20034853-20035181
Length = 409
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 180 HHHRSKVSTLTVDSLV*QNTHHXSS 106
HHH ++T+ SL+ + HH SS
Sbjct: 260 HHHHHAIATMDGSSLIGDHHHHSSS 284
>10_02_0161 + 6044625-6045098
Length = 157
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 326 RKRRCRCDTAGRPSDS*RRTG 388
R R CRCD G D RRTG
Sbjct: 14 RGRPCRCDARGGDGDVGRRTG 34
>03_04_0118 + 17418558-17419310
Length = 250
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -3
Query: 464 PLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHL 306
P+ +++FE L+F D L+ ++ S C++ G L T G+ D+ +HL
Sbjct: 80 PVPKLTFED-LVFYIDMWLDGSLIFSQAVSGCILRGGLQNTPCGIPDVLVAHL 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,863,428
Number of Sequences: 37544
Number of extensions: 330878
Number of successful extensions: 941
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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