Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F15
(637 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC126303-1|AAI26304.1| 1720|Homo sapiens polymerase (RNA) I poly... 136 5e-32
BC117173-1|AAI17174.1| 1720|Homo sapiens polymerase (RNA) I poly... 136 5e-32
BC017115-1|AAH17115.2| 574|Homo sapiens POLR1A protein protein. 136 5e-32
AK025568-1|BAB15171.1| 495|Homo sapiens protein ( Homo sapiens ... 136 5e-32
AC012511-1|AAY24277.1| 922|Homo sapiens unknown protein. 136 5e-32
U33460-1|AAC99959.1| 1717|Homo sapiens DNA-directed RNA polymera... 132 1e-30
AL117467-1|CAB55942.1| 95|Homo sapiens hypothetical protein pr... 117 4e-26
BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (D... 73 1e-12
AY091462-1|AAM12032.1| 299|Homo sapiens RNA polymerase III subu... 73 1e-12
AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (D... 73 1e-12
AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III larg... 71 3e-12
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 69 1e-11
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 65 2e-10
BC014399-1|AAH14399.1| 162|Homo sapiens POLR3A protein protein. 54 3e-07
>BC126303-1|AAI26304.1| 1720|Homo sapiens polymerase (RNA) I
polypeptide A, 194kDa protein.
Length = 1720
Score = 136 bits (330), Expect = 5e-32
Identities = 61/106 (57%), Positives = 86/106 (81%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A +VI KEI++VF VYGI VDPRHL+L+ADYM + G+++P++R G+ ++SSPLQ
Sbjct: 1611 TYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQ 1670
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
QM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 1671 QMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 1716
>BC117173-1|AAI17174.1| 1720|Homo sapiens polymerase (RNA) I
polypeptide A, 194kDa protein.
Length = 1720
Score = 136 bits (330), Expect = 5e-32
Identities = 61/106 (57%), Positives = 86/106 (81%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A +VI KEI++VF VYGI VDPRHL+L+ADYM + G+++P++R G+ ++SSPLQ
Sbjct: 1611 TYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQ 1670
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
QM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 1671 QMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 1716
>BC017115-1|AAH17115.2| 574|Homo sapiens POLR1A protein protein.
Length = 574
Score = 136 bits (330), Expect = 5e-32
Identities = 61/106 (57%), Positives = 86/106 (81%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A +VI KEI++VF VYGI VDPRHL+L+ADYM + G+++P++R G+ ++SSPLQ
Sbjct: 465 TYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQ 524
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
QM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 525 QMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 570
>AK025568-1|BAB15171.1| 495|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21915 fis, clone HEP03920. ).
Length = 495
Score = 136 bits (330), Expect = 5e-32
Identities = 61/106 (57%), Positives = 86/106 (81%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A +VI KEI++VF VYGI VDPRHL+L+ADYM + G+++P++R G+ ++SSPLQ
Sbjct: 386 TYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQ 445
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
QM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 446 QMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 491
>AC012511-1|AAY24277.1| 922|Homo sapiens unknown protein.
Length = 922
Score = 136 bits (330), Expect = 5e-32
Identities = 61/106 (57%), Positives = 86/106 (81%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A +VI KEI++VF VYGI VDPRHL+L+ADYM + G+++P++R G+ ++SSPLQ
Sbjct: 813 TYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQ 872
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
QM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 873 QMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 918
>U33460-1|AAC99959.1| 1717|Homo sapiens DNA-directed RNA polymerase I,
largest subunit protein.
Length = 1717
Score = 132 bits (319), Expect = 1e-30
Identities = 61/106 (57%), Positives = 86/106 (81%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A +VI KEI++VF VYGI VDPRHL+L+ADYM + G+++P++R G+ ++SSPLQ
Sbjct: 1609 TYGIE-ALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQ 1667
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
QM+FE+S FLK A + D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 1668 QMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELK 1713
>AL117467-1|CAB55942.1| 95|Homo sapiens hypothetical protein
protein.
Length = 95
Score = 117 bits (281), Expect = 4e-26
Identities = 50/91 (54%), Positives = 74/91 (81%)
Frame = -3
Query: 590 QNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAI 411
++VF VYGI VDPRHL+L+ADYM + G+++P++R G+ ++SSPLQQM+FE+S FLK A
Sbjct: 1 KDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQAT 60
Query: 410 LNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 318
+ D+LRS S+CL+VG++ R GTG+F+L+
Sbjct: 61 MLGSHDELRSPSACLVVGKVVRGGTGLFELK 91
>BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide A, 155kDa protein.
Length = 1390
Score = 72.5 bits (170), Expect = 1e-12
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A II EIQ +G+++D RH+ L++D MTY G ++R G+ + S L
Sbjct: 1257 TLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVL 1316
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 315
SFE + L DA +KD + S C+++G GTG+F L H
Sbjct: 1317 MLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLH 1364
>AY091462-1|AAM12032.1| 299|Homo sapiens RNA polymerase III subunit
RPC155-D protein.
Length = 299
Score = 72.5 bits (170), Expect = 1e-12
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A II EIQ +G+++D RH+ L++D MTY G ++R G+ + S L
Sbjct: 166 TLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVL 225
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 315
SFE + L DA +KD + S C+++G GTG+F L H
Sbjct: 226 MLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLH 273
>AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) (155kD) (RPC155) protein.
Length = 1390
Score = 72.5 bits (170), Expect = 1e-12
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A II EIQ +G+++D RH+ L++D MTY G ++R G+ + S L
Sbjct: 1257 TLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVL 1316
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 315
SFE + L DA +KD + S C+++G GTG+F L H
Sbjct: 1317 MLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLH 1364
>AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III largest
subunit protein.
Length = 1391
Score = 70.9 bits (166), Expect = 3e-12
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNV-YGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSP 462
T GIE A II EIQ V +G+++D RH+ L++D MTY G ++R G+ + S
Sbjct: 1257 TLGIEAARTTIINEIQYTMVVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESV 1316
Query: 461 LQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 315
L SFE + L DA +KD + S C+++G GTG+F L H
Sbjct: 1317 LMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLH 1365
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 68.9 bits (161), Expect = 1e-11
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSS-PLQQ 453
GIE K + +E+ +V + G V+ RHL L+ D MT G ++R G+ + PL +
Sbjct: 1370 GIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMK 1429
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A + + D ++ S +M+G+L GTG FDL
Sbjct: 1430 CSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 65.3 bits (152), Expect = 2e-10
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSS-PLQQ 453
GIE K + +E+ +V + G V+ RHL L+ D MT G ++R G+ + PL +
Sbjct: 1370 GIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMK 1429
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A + + ++ S +M+G+L GTG FDL
Sbjct: 1430 CSFEETVDVLMEAAAHGESYPMKGVSENIMLGQLAPAGTGCFDL 1473
>BC014399-1|AAH14399.1| 162|Homo sapiens POLR3A protein protein.
Length = 162
Score = 54.4 bits (125), Expect = 3e-07
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A II EIQ +G+++D RH+ L++D MTY G ++R G+ + S L
Sbjct: 73 TLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVL 132
Query: 458 QQMSFESSLLFLKDAILNSKKDDL 387
SFE + L DA +KD +
Sbjct: 133 MLASFEKTADHLFDAAYFGQKDSV 156
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,356,021
Number of Sequences: 237096
Number of extensions: 1707631
Number of successful extensions: 3487
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3480
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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