Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F15
(637 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y09103-1|CAA70321.1| 1644|Drosophila melanogaster largest subuni... 146 2e-35
AY121632-1|AAM51959.1| 542|Drosophila melanogaster GM01935p pro... 146 2e-35
AE013599-1910|AAF58234.1| 1642|Drosophila melanogaster CG10122-P... 146 2e-35
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 72 8e-13
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 72 8e-13
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 72 8e-13
AE014298-2217|AAF48509.2| 1304|Drosophila melanogaster CG17209-P... 62 6e-10
AY069723-1|AAL39868.1| 492|Drosophila melanogaster LP02895p pro... 29 7.0
AE014296-1|AAF47322.2| 492|Drosophila melanogaster CG32475-PA p... 29 7.0
AE014134-2984|AAF53715.3| 1377|Drosophila melanogaster CG10600-P... 28 9.2
>Y09103-1|CAA70321.1| 1644|Drosophila melanogaster largest subunit of
RNA polymeraseI (A) protein.
Length = 1644
Score = 146 bits (354), Expect = 2e-35
Identities = 72/105 (68%), Positives = 84/105 (80%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A++VI+KE+ NVF VYGITVD RHL+LIADYMT++G F+P+SRKGME SSSPLQ
Sbjct: 1535 TYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQ 1594
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
QMSFESSL FLK A + D+L S SS LMVG R GTG F+L
Sbjct: 1595 QMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFEL 1639
>AY121632-1|AAM51959.1| 542|Drosophila melanogaster GM01935p
protein.
Length = 542
Score = 146 bits (354), Expect = 2e-35
Identities = 72/105 (68%), Positives = 84/105 (80%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A++VI+KE+ NVF VYGITVD RHL+LIADYMT++G F+P+SRKGME SSSPLQ
Sbjct: 433 TYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQ 492
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
QMSFESSL FLK A + D+L S SS LMVG R GTG F+L
Sbjct: 493 QMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFEL 537
>AE013599-1910|AAF58234.1| 1642|Drosophila melanogaster CG10122-PA
protein.
Length = 1642
Score = 146 bits (354), Expect = 2e-35
Identities = 72/105 (68%), Positives = 84/105 (80%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQ 456
TYGIE A++VI+KE+ NVF VYGITVD RHL+LIADYMT++G F+P+SRKGME SSSPLQ
Sbjct: 1533 TYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGMEHSSSPLQ 1592
Query: 455 QMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
QMSFESSL FLK A + D+L S SS LMVG R GTG F+L
Sbjct: 1593 QMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFEL 1637
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 71.7 bits (168), Expect = 8e-13
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE K + KE+ V YG+ V+ RHL L+ D MT G ++R G+ + L +
Sbjct: 1362 GIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1421
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L DA +++ D +R S +++G+L + GTG FDL
Sbjct: 1422 CSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDL 1465
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 71.7 bits (168), Expect = 8e-13
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE K + KE+ V YG+ V+ RHL L+ D MT G ++R G+ + L +
Sbjct: 904 GIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 963
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L DA +++ D +R S +++G+L + GTG FDL
Sbjct: 964 CSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDL 1007
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 71.7 bits (168), Expect = 8e-13
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE K + KE+ V YG+ V+ RHL L+ D MT G ++R G+ + L +
Sbjct: 1362 GIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1421
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L DA +++ D +R S +++G+L + GTG FDL
Sbjct: 1422 CSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDL 1465
>AE014298-2217|AAF48509.2| 1304|Drosophila melanogaster CG17209-PA
protein.
Length = 1304
Score = 62.1 bits (144), Expect = 6e-10
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Frame = -3
Query: 635 TYGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPL 459
T GIE A +I+ EI V +G++VD RH+ L+A MT G ++R G+ + S
Sbjct: 1171 TLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVF 1230
Query: 458 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 309
SFE + L DA + D + S +++G GTG+F L H
Sbjct: 1231 NLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQQH 1280
>AY069723-1|AAL39868.1| 492|Drosophila melanogaster LP02895p
protein.
Length = 492
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 575 VYGITVDPRHLTLIADYMTYNGIFEPMSR 489
V+ TV PRH + D++ NGI P SR
Sbjct: 49 VHNWTVIPRHFVAVYDFVIENGIRIPASR 77
>AE014296-1|AAF47322.2| 492|Drosophila melanogaster CG32475-PA
protein.
Length = 492
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 575 VYGITVDPRHLTLIADYMTYNGIFEPMSR 489
V+ TV PRH + D++ NGI P SR
Sbjct: 49 VHNWTVIPRHFVAVYDFVIENGIRIPASR 77
>AE014134-2984|AAF53715.3| 1377|Drosophila melanogaster CG10600-PA
protein.
Length = 1377
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 386 RSASSCLMVGRLCRTGTGVFDLQHSHLYGKVNLSKS*PPR 267
R S C ++ RT GV LQH+ G +S PPR
Sbjct: 453 RECSKCYKRSKIRRTSVGVQCLQHAPATGPWQTVQSLPPR 492
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,168,261
Number of Sequences: 53049
Number of extensions: 549824
Number of successful extensions: 1565
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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