Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F15
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr... 116 1e-26
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr... 116 1e-26
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ... 116 1e-26
Z93392-2|CAI46615.1| 120|Caenorhabditis elegans Hypothetical pr... 105 3e-23
Z83219-10|CAI46565.1| 120|Caenorhabditis elegans Hypothetical p... 105 3e-23
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 73 2e-13
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 72 3e-13
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,... 71 9e-13
U64848-2|AAM29669.2| 376|Caenorhabditis elegans Hypothetical pr... 31 0.52
AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical ... 30 1.6
AF098986-2|AAC67423.1| 410|Caenorhabditis elegans Hypothetical ... 29 2.8
Z82069-5|CAB04906.2| 739|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 27 8.5
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 27 8.5
AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical ... 27 8.5
>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 116 bits (279), Expect = 1e-26
Identities = 53/104 (50%), Positives = 77/104 (74%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YG+E +K I E+ NVF VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ+
Sbjct: 1607 YGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQK 1666
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
M+FE+++ FL++A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 1667 MTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 1710
>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 116 bits (279), Expect = 1e-26
Identities = 53/104 (50%), Positives = 77/104 (74%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YG+E +K I E+ NVF VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ+
Sbjct: 1607 YGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQK 1666
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
M+FE+++ FL++A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 1667 MTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 1710
>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 116 bits (279), Expect = 1e-26
Identities = 53/104 (50%), Positives = 77/104 (74%)
Frame = -3
Query: 632 YGIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQ 453
YG+E +K I E+ NVF VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ+
Sbjct: 1607 YGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQK 1666
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
M+FE+++ FL++A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 1667 MTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 1710
>Z93392-2|CAI46615.1| 120|Caenorhabditis elegans Hypothetical
protein Y48E1A.1b protein.
Length = 120
Score = 105 bits (251), Expect = 3e-23
Identities = 48/92 (52%), Positives = 70/92 (76%)
Frame = -3
Query: 596 EIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKD 417
E+ NVF VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ+M+FE+++ FL++
Sbjct: 2 EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLRE 61
Query: 416 AILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 62 ALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 93
>Z83219-10|CAI46565.1| 120|Caenorhabditis elegans Hypothetical
protein Y48E1A.1b protein.
Length = 120
Score = 105 bits (251), Expect = 3e-23
Identities = 48/92 (52%), Positives = 70/92 (76%)
Frame = -3
Query: 596 EIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKD 417
E+ NVF VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ+M+FE+++ FL++
Sbjct: 2 EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLRE 61
Query: 416 AILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 62 ALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 93
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASS-SPLQQ 453
GIE K I +E+ NV + G V+ RHL L+ D MT G SR G+ L +
Sbjct: 1365 GIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAYSRHGINRQEVGALMR 1424
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A +++++D ++ S +M+G+L R GTG FDL
Sbjct: 1425 CSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDL 1468
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 72.1 bits (169), Expect = 3e-13
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASS-SPLQQ 453
GIE K I +E+ NV + G V+ RHL L+ D MT G ++R G+ L +
Sbjct: 1358 GIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMR 1417
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 321
SFE ++ L +A +++++D ++ S +M+G+L R GTG FDL
Sbjct: 1418 CSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDL 1461
>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
class iii (c) protein1 protein.
Length = 1400
Score = 70.5 bits (165), Expect = 9e-13
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Frame = -3
Query: 629 GIEXANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQQ 453
GIE A II EI + +GI +D RH+ L+AD MTY G ++R G+ + S L
Sbjct: 1273 GIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLL 1332
Query: 452 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 309
SFE ++ L +A S++D + S C+++G GTG F L +
Sbjct: 1333 ASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 1380
>U64848-2|AAM29669.2| 376|Caenorhabditis elegans Hypothetical
protein C50E3.6 protein.
Length = 376
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 346 RHSRPTIRQLEADRRSSFLEFNMASFKNKSDDS 444
+ S P + Q DR S L N+ASF SDD+
Sbjct: 247 KESSPILLQKRGDRSSDHLHHNVASFSRNSDDN 279
>AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical
protein ZK6.2 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +1
Query: 271 GGHDLDRLTLPYKCECCRSKTPVPVRHSRPTIRQLEADRRSSFLEFNMASFKNKSDDSND 450
G + +R KC CR + + V S P+ L + L+ + + +N + ND
Sbjct: 48 GENCFERPPFTRKCAACRFQKCLHVGMSLPSFLHLGEQNKEKCLDGIIRNLENLNFKRND 107
Query: 451 ICCNGDEDASIP 486
+ CN + S P
Sbjct: 108 LTCNYRNNFSNP 119
>AF098986-2|AAC67423.1| 410|Caenorhabditis elegans Hypothetical
protein C36C9.3 protein.
Length = 410
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = -1
Query: 319 STRTCMAKLICLSRDRRVIHRAFR---SVEGAWLYGLKSFAFPIRDKLISSSSVEGVNFD 149
+ + C L + +RRVI ++ S+E LY K F I L S+ S+E +FD
Sbjct: 179 AVQLCHNDLKLVLENRRVILQSLIIDFSIEEKDLY-TKCFT-DITKMLKSTRSIEVEDFD 236
Query: 148 S*QFSITEYASXIQ 107
+ Q SI++YAS ++
Sbjct: 237 ALQVSISDYASLLE 250
>Z82069-5|CAB04906.2| 739|Caenorhabditis elegans Hypothetical
protein W04A8.6 protein.
Length = 739
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 518 YNGIFEPMSRKG-MEASSSPLQQMSFESSLLFLK-DAILNSKKD 393
Y I +P + KG M +PL SF SS +K D++LN + +
Sbjct: 254 YQVITKPKTTKGPMSCPGAPLDDRSFRSSSRKIKDDSVLNRRSE 297
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 425 RTKATIRMTFAVTATKTPPFPSGS*AQRSRCTSCSRL*GSSGADQR 562
+T T R + T T+ PP + S +Q + ++CS G G R
Sbjct: 504 QTTTTARTSTTTTTTQAPPTTTTSTSQCASWSACSAQCGGCGTQSR 549
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 425 RTKATIRMTFAVTATKTPPFPSGS*AQRSRCTSCSRL*GSSGADQR 562
+T T R + T T+ PP + S +Q + ++CS G G R
Sbjct: 504 QTTTTARTSTTTTTTQAPPTTTTSTSQCASWSACSAQCGGCGTQSR 549
>AF016417-2|AAB65279.2| 533|Caenorhabditis elegans Hypothetical
protein F17A9.2 protein.
Length = 533
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 406 FNMASFKNKSDDSNDICCNGDEDASIPFRLIGSKIPLY 519
F + F DDSN+ NG+ + IP ++G P Y
Sbjct: 39 FCVGEFFGDDDDSNEKVINGNIEFPIPTYILGPANPRY 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,937,436
Number of Sequences: 27780
Number of extensions: 262491
Number of successful extensions: 761
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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