Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F14
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    28   0.85 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.0  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    26   2.6  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    26   3.4  
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    25   4.5  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   4.5  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.0  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   7.9  

>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 246 ILLFINWTKLFLYNLFKSKKVFPPPIKIALDSLIAVSGLGYV 371
           ++L+ N   +   NL  ++ V+PPP K  L  L+A+   G V
Sbjct: 224 LILYTNSESIPKLNLRSNELVYPPPSKDLLQKLLALEKDGQV 265


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 217 SSAGTNVATKSIHTTNDMPIIYPPS 143
           SSA T  +T S+ +TN   I+ PPS
Sbjct: 50  SSASTETSTHSVTSTNITSIVPPPS 74


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 220 GSSAGTNVATKSIHTTNDMPIIYPPSFEAIGIVP 119
           GSSAG N+A    H     P  +PP    + +VP
Sbjct: 179 GSSAGGNIAAVLSHKVAASPANFPPLVLQLLVVP 212


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 262 LMKSKIDDGSLIYIGSSAGTNVATKSIHTTNDMPIIYPPSFEAIGI 125
           +M  KI D +   +G   G     K I    ++P+ +P  FE++GI
Sbjct: 134 MMVEKIPDSTYEMVG---GLEKQIKEIKEVIELPVKHPELFESLGI 176


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 202 NVATKSIHTTN-DMPIIYPPSFEAIGIVPFNI 110
           N++T+S       +P+I PPSF     + FN+
Sbjct: 432 NISTESPSVAMPSIPVIQPPSFPIFSSIDFNV 463


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 189 FVATFVPALLPMYIKLPSSILLFI 260
           F+ T +PAL+ + + LPS  LL++
Sbjct: 79  FIWTLIPALILILVALPSFKLLYL 102


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 190 KSIHTTNDMPIIYPPSFEAIGI 125
           K++ T ND+P +  PS + IG+
Sbjct: 188 KTVETKNDVPEVSRPSTDTIGV 209


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 183 ILFVATFVPALLPMYIKLPSSILLFINWTKLFLYNLFKS 299
           IL + TF+  +  +Y       L FINW +L L +  +S
Sbjct: 540 ILLILTFLGIVASLYYCFAHG-LQFINWPRLLLPSFLRS 577


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 113  VEWNYANCFKTWWINYWHIICCMNTFC 193
            + W + +  KT + +  H I  +NTFC
Sbjct: 3072 IVWEFKHLGKTSYFSCLHFIRFLNTFC 3098


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 189  FVATFVPALLPMYIKLP 239
            +V  F+PALL M++ +P
Sbjct: 1833 YVTEFIPALLDMHVHIP 1849


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,181
Number of Sequences: 5004
Number of extensions: 35816
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)