Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F14
(483 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023835-8|CAA19491.1| 483|Caenorhabditis elegans Hypothetical ... 29 2.3
Z82285-4|CAD56247.1| 392|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z82285-3|CAD56246.1| 573|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z81583-5|CAB04673.1| 574|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z69787-6|CAA93637.1| 341|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z34802-1|CAA84336.1| 531|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z29094-12|CAA82340.2| 313|Caenorhabditis elegans Hypothetical p... 27 5.4
AL032640-3|CAA21641.2| 424|Caenorhabditis elegans Hypothetical ... 27 5.4
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 27 7.1
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 27 7.1
Z50872-4|CAA90757.2| 498|Caenorhabditis elegans Hypothetical pr... 27 9.4
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr... 27 9.4
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 27 9.4
>AL023835-8|CAA19491.1| 483|Caenorhabditis elegans Hypothetical
protein Y37A1B.8 protein.
Length = 483
Score = 28.7 bits (61), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 188 FCCYICSRTASNVY*TTIIN 247
FCCY C T S ++ T++N
Sbjct: 114 FCCYTCKLTISKLFGLTVVN 133
>Z82285-4|CAD56247.1| 392|Caenorhabditis elegans Hypothetical
protein T28F3.4b protein.
Length = 392
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 164 HI-ICCMNTFCCYICSRTASNVY*TTIINFTFH*LD*VIFVQSFQK*KSI 310
HI + CM FCC R + T +IN T L+ +F ++F+ SI
Sbjct: 32 HICLLCMAGFCCTTFMRMHIAISMTCMINSTALALESAVFPEAFENSSSI 81
>Z82285-3|CAD56246.1| 573|Caenorhabditis elegans Hypothetical
protein T28F3.4a protein.
Length = 573
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 164 HI-ICCMNTFCCYICSRTASNVY*TTIINFTFH*LD*VIFVQSFQK*KSI 310
HI + CM FCC R + T +IN T L+ +F ++F+ SI
Sbjct: 32 HICLLCMAGFCCTTFMRMHIAISMTCMINSTALALESAVFPEAFENSSSI 81
>Z81583-5|CAB04673.1| 574|Caenorhabditis elegans Hypothetical
protein T02G6.5 protein.
Length = 574
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 186 LFVATFVPALLPMYIKLPSSILLFINWTKLFLYNLFKSKKVFPPPIKIALDSLIAVS 356
L +AT + A + ++ K+P + ++T + L S VF + A+D +++ S
Sbjct: 146 LMLATIMTAFIVIFFKMPGKVFCSHDYTYFKTFQLLISDVVFKTILFEAMDEVLSNS 202
>Z69787-6|CAA93637.1| 341|Caenorhabditis elegans Hypothetical
protein C44C10.7 protein.
Length = 341
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 216 LPMYIKLPSSILLFINWTKLFLYNLFKSKKVFP 314
L ++ KL S++LF++ FL +L SK FP
Sbjct: 10 LQLFHKLSISLILFLHHFSCFLTDLQSSKMTFP 42
>Z34802-1|CAA84336.1| 531|Caenorhabditis elegans Hypothetical
protein M88.1 protein.
Length = 531
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 475 KDLIFIPYAXNDFDGYTTKIKNVIDQWGFTVTGLHTYPKPE 353
K +F+PY N + T++ V+ G VT +H P+
Sbjct: 18 KYAVFVPYMANSQVQFCTRVAEVLANGGHDVTMIHLSHLPD 58
>Z29094-12|CAA82340.2| 313|Caenorhabditis elegans Hypothetical
protein C07A9.1 protein.
Length = 313
Score = 27.5 bits (58), Expect = 5.4
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -3
Query: 289 RLYKNNLVQLMKSKIDDGSLIYIGSSAGTNVATKSIHTTNDMPI-IYPPSFEAIGIVPFN 113
RLY N + +K++ + G +Y+ N++T + PI I P I + P
Sbjct: 187 RLYSKNEIGPLKTEAETGEKVYL---KPINISTNGFPEFSGPPIVILNPYKRKIKVKPVM 243
Query: 112 INPHYIDKVENEEHKGETRD 53
++ + + + K ET D
Sbjct: 244 VSQTETEMSRSRKEKEETED 263
>AL032640-3|CAA21641.2| 424|Caenorhabditis elegans Hypothetical
protein Y43F8A.3 protein.
Length = 424
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 262 LMKSKIDDGSLIYIGSSAGTNVAT 191
L K KID +I +G SAG N+AT
Sbjct: 187 LEKFKIDPKKVILVGDSAGGNLAT 210
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 262 LMKSKIDDGSLIYIGSSAGTNVATKSIHTTNDMPIIYPPSFEAIGI 125
+M K+ D + +G G + K I ++P+ +P F+A+GI
Sbjct: 143 MMVEKVPDSTYEMVG---GLDTQIKEIKEVIELPVKHPELFDALGI 185
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 262 LMKSKIDDGSLIYIGSSAGTNVATKSIHTTNDMPIIYPPSFEAIGI 125
+M K+ D + +G G + K I ++P+ +P F+A+GI
Sbjct: 164 MMVEKVPDSTYEMVG---GLDTQIKEIKEVIELPVKHPELFDALGI 206
>Z50872-4|CAA90757.2| 498|Caenorhabditis elegans Hypothetical
protein C05D12.1 protein.
Length = 498
Score = 26.6 bits (56), Expect = 9.4
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 301 LLLKRLYKNNLVQLMKSKIDDGS--LIYIGSSAGTNVATKSIHTTND 167
LL R +N Q M ++ GS L++ SA K IH+TND
Sbjct: 151 LLDNRPLIDNDTQFMVHDLESGSYHLLFARGSANKYTLEKDIHSTND 197
>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical
protein W03A3.2 protein.
Length = 1540
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/40 (27%), Positives = 26/40 (65%)
Frame = -3
Query: 313 GNTFLLLKRLYKNNLVQLMKSKIDDGSLIYIGSSAGTNVA 194
G T+LL+K+ ++ +++++++ ID G L + TN++
Sbjct: 279 GETYLLIKKCDRDAVLKIIETPIDQGVLTRKRDAERTNLS 318
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
protein ZK783.1 protein.
Length = 2585
Score = 26.6 bits (56), Expect = 9.4
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = -3
Query: 442 DFDGYTTKIKNV-IDQWGFTVTGLHTYPKPETAISESKAIFIGGGNTFLLLKRLYKNNLV 266
D D T+I N+ ++W + G P A + F+ + + ++ +
Sbjct: 547 DIDECITEICNIEANEWCVNLIGGFVCCNPTNATHDDCIDFLTKVKIYAYMIIIFLLKGL 606
Query: 265 QLMKSKIDDGSLIYIGSSAGTNVATKSIHTTNDMPI 158
++ K K G + G+ T VAT+S H+T+D I
Sbjct: 607 EITKEK---GLHVIGGNEEDTVVATRSNHSTSDQLI 639
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,032,156
Number of Sequences: 27780
Number of extensions: 195681
Number of successful extensions: 601
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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