Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F12
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    29   0.40 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   2.9  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   5.0  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   6.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.6  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   8.7  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 348 VVAVTRVDLLRSC-QSYNEDGEQNEQFREHFEQFSK 452
           ++ V R +L+R C   +NE  E  E F+  ++ FSK
Sbjct: 383 IMKVIRKNLVRRCLDMFNEIAEDKENFKTFYDAFSK 418


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 364 LVTATTITDIRIQATSVIPDTVPWPMDRTVAMLPL 260
           +V  TTIT +     +++ +T+  PM+ T  +LP+
Sbjct: 120 MVETTTITPMVEAMITLMEETMTTPMEETTTILPM 154


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 172 IMILLFISFEILINNFRGLLSIYK 101
           ++ LL +  +I   NFRG LSIY+
Sbjct: 328 VVALLLMQHKISNGNFRGALSIYQ 351


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 417 EQFREHFEQFSKLTDDLGHRR 479
           E FREHF+  S L D +G  R
Sbjct: 375 EDFREHFKTVSALMDCVGCER 395


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 453  TLKTAQNVRETVHSVRR--PRCSSGKT 379
            T+   Q +R+ +H++R+  PR SS KT
Sbjct: 1161 TITAEQEMRDLLHNIRQPLPRSSSSKT 1187


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 466 RSSVNFENCSKCSRNCSFCSPSSL*LWQD 380
           R + ++ N  KC +N    SP++  LW D
Sbjct: 87  RETKDYNNSLKCYQNALAISPNNESLWYD 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,428
Number of Sequences: 5004
Number of extensions: 31846
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)