Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F10
         (567 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 49  KRYLPISLNYLLYF 8
           KR+LP+ ++YLL F
Sbjct: 171 KRFLPVYVSYLLIF 184


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 243 PPLLYSILNPETNSLSPS 296
           PP+   I+NP+    SPS
Sbjct: 410 PPMQSQIINPQPQITSPS 427


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 265 NIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFF 143
           N+E  R  F  +F++ +  +LF   +L I+ +    + FFF
Sbjct: 290 NLEQSRY-FIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 265 NIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFF 143
           N+E  R  F  +F++ +  +LF   +L I+ +    + FFF
Sbjct: 290 NLEQSRY-FIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 265 NIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFF 143
           N+E  R  F  +F++ +  +LF   +L I+ +    + FFF
Sbjct: 290 NLEQSRY-FIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 265 NIEYRRGGFALIFLAEYSSILFIRMILVIINMGGYNLRFFF 143
           N+E  R  F  +F++ +  +LF   +L I+ +    + FFF
Sbjct: 290 NLEQSRY-FIYMFVSVWKCLLFFVSVLFILLVKEGEVAFFF 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,541
Number of Sequences: 336
Number of extensions: 964
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)