Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F09
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    29   0.81 
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   3.3  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   3.3  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   7.5  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.5  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   9.9  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   9.9  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   9.9  

>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 318 LAINKIIEEYCRLSERHVGMXKLIQQNKPGVMEIQLCAV 202
           L +  +   Y R+ ER   + K   ++  GV +IQLCAV
Sbjct: 338 LFLEDVHNTYVRIHERSAAISKEQAESGEGVEQIQLCAV 376


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 224 WKFNSVLLVFKVHFNIVS-VTLCTLLKMLYSS 132
           W F+++L VFK   N VS  TL T L+++ S+
Sbjct: 445 WHFDTLLRVFKSAGNFVSESTLSTFLRLIASA 476


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +1

Query: 103 CFENPXYLIVDEYSILSNVHSVTDTILK*TLNTNSTELNFHYSGFILLDQLXHTNVSFAQ 282
           CF+    LI + + ++  VHS  +TI          E  FH     LLD   H   S AQ
Sbjct: 513 CFDKVLKLIQEGHQVMIFVHSRKETI---NSAKKLREQFFHEGEADLLDNSQHEKYSLAQ 569

Query: 283 STI 291
             +
Sbjct: 570 RDV 572


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 485 KQLIICLNKLVFVCVETDLLREVNGRP-VFRLRH 583
           K+ I+  NK+ +V +E D +  +NG P + RL H
Sbjct: 87  KKYIVKENKVKYVNIERDSMMRLNGFPGISRLFH 120


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 16 CYFTSLAIYRVVIIGFYNFQSTLT 87
          C+F SL+ +  V+ G   F STL+
Sbjct: 4  CFFVSLSFWFAVLFGISFFSSTLS 27


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 19   YFTSLAIYRVVIIGFYNFQSTLTVMLV 99
            + T  + YR  +  FYNF  T+T++++
Sbjct: 986  FCTKSSHYRKKLWDFYNFSCTITILML 1012


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +1

Query: 220 FHYSGFILLDQLXHTNVSFAQSTIFFYDFIDCQQLHILKTMHINKHIRKIKHY-LNLQYV 396
           FH S F L D+   TNV           FIDC   H      +   I+    Y  N  Y+
Sbjct: 583 FHASNFFLRDETNETNVF----------FIDCGGSHRPWAFSMEMDIQSFASYRANQLYI 632

Query: 397 FITDTQIIQ 423
           + T   ++Q
Sbjct: 633 YSTALNLLQ 641


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 178 ILK*TLNTNSTELNFHYSGFILLDQLXHTNVSFAQSTIFFYDFIDCQQLHIL 333
           I K + ++ S + ++     +LL    HT   F +   +FY+  D QQ+  L
Sbjct: 375 IQKFSHSSRSHDKSYTKKLLLLLKNKVHTIKEFEKIVFYFYEASDLQQIRSL 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,477
Number of Sequences: 5004
Number of extensions: 54909
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)