Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F09
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 35 0.068
08_02_0432 - 17103230-17103322,17103403-17103542,17104950-171052... 33 0.21
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 33 0.21
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 33 0.27
10_08_0356 + 17141107-17141165,17141502-17141650,17141748-171419... 32 0.36
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143... 31 1.1
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 30 1.5
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 29 3.4
02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747... 29 4.5
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -3
Query: 670 VTPSIPXDFFPLSVTWTSDTSXALXTAVXVTQAEDGSPVDFSQEISFHADKYEFV 506
V P+ P FFP+S+ +++ ++ + + +DG+P +SQ A Y+ V
Sbjct: 755 VPPADPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVAANYQVV 809
>08_02_0432 -
17103230-17103322,17103403-17103542,17104950-17105211,
17105391-17105495,17105496-17105558,17106876-17107022
Length = 269
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -3
Query: 670 VTPSIPXDFFPLSVTWTSDTSXALXTAVXVTQAEDGS-PVDFSQEISFHADKYEFV 506
V P+ P FFP+SV +++ + + + ++GS P +SQ + AD Y+ V
Sbjct: 214 VPPADPSMFFPISVGFSTSNTFSDVKVPGIRPLKEGSNPPKYSQRVRLVADNYQVV 269
>05_03_0443 +
14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -3
Query: 670 VTPSIPXDFFPLSVTWTSDTSXALXTAVXVTQAEDGSPVDFSQEISFHADKYEFV 506
V P+ P FFP+S+ +++ ++ + + +DG+P +SQ Y+ V
Sbjct: 581 VPPADPSTFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVTANYQVV 635
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 670 VTPSIPXDFFPLSVTWTSDTSXALXTAVXVTQAEDGS-PVDFSQEISFHADKYEFV 506
V P+ P F+P+SV +++ + + + +GS P +SQ + AD Y+ V
Sbjct: 621 VPPADPSMFYPISVGFSASNTFSNVKVTGIRPLNEGSNPPKYSQRVRLVADNYQVV 676
>10_08_0356 +
17141107-17141165,17141502-17141650,17141748-17141969,
17142051-17142187,17142319-17142570,17143915-17144063,
17144476-17144540,17144633-17144701,17145014-17145144,
17145218-17145505,17145669-17145811,17145898-17145951,
17146000-17146080,17149048-17149222,17149223-17149647,
17149929-17150144,17150279-17150309
Length = 881
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +1
Query: 226 YSGFILLDQLXHTNVSFAQSTIFFYDFIDCQQLHILKTMHINKHIRKIKHYLNLQYVFIT 405
Y G I+LD + F Y DC + L N IR + + L++ Y FIT
Sbjct: 583 YMGNIILDDRWPVPEPYCSIYFFLYSPCDCILVSFLPAPAFNSWIRSVYYILHVFYYFIT 642
>04_03_0517 +
16712487-16712570,16713715-16714059,16714149-16714301,
16714889-16714972,16715426-16715479,16715552-16715647,
16716163-16716258,16716941-16717086,16717650-16717799,
16717889-16718018,16718128-16718787,16718881-16718979,
16719058-16719210,16719323-16720054,16720338-16720640
Length = 1094
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = -1
Query: 306 KIIEEYCRLSERHVGMXKLIQQNKPGVMEIQ 214
+I+E+Y L ERH+G+ + ++ + GV +++
Sbjct: 899 RILEQYAELEERHIGLLAMHRKIREGVEDVK 929
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -1
Query: 429 KTLYYLCIGNKYIL*IKIMFDFTNVFVDVHRFQNMKLLAINKIIEEYCRLSERHVGMXKL 250
+ LY L I NK K F+ F++ N + + + ++ ++YC + + KL
Sbjct: 119 EALYLLLITNKQKGVCKAAFELLFAFIEAISLGNKENVTVAQV-KQYCEMESHEEKLHKL 177
Query: 249 IQQNK 235
+ Q+K
Sbjct: 178 VMQSK 182
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 655 PXDFFPLSVTWTSDTSXALXTAVXVTQAEDGSPVDFSQEISFHADKYEFV 506
P FFP+SV +++ + + + +GSP FSQ Y+ V
Sbjct: 500 PSTFFPISVGFSASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 549
>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -1
Query: 504 KQIISCFIFFFV*WEHYVNLFL--MIKKTLYYLCIGNKYIL*IKIMFDFTNVFVDVHRFQ 331
K +I C WE+ + ++ I K L Y+ I+ ++ FD NV + +
Sbjct: 1858 KSLIICPSTLVAHWEYEIEKYIDSSIMKPLQYIGSSQDRII-LRSQFDKFNVIITSYDII 1916
Query: 330 NMKLLAINKIIEEYCRLSERHV 265
+ + + YC L E H+
Sbjct: 1917 RKDIDFLENVFWNYCVLDEGHI 1938
>02_03_0273 +
17173983-17174339,17174423-17174575,17174638-17174700,
17174943-17175026,17175120-17175242,17175466-17175519,
17175669-17175764,17176163-17176258,17177179-17177324,
17178503-17178632,17178697-17179272,17179364-17179462,
17179535-17179687,17179794-17180558,17181384-17181683
Length = 1064
Score = 28.7 bits (61), Expect = 4.5
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -1
Query: 306 KIIEEYCRLSERHVGMXKLIQQNKPGVMEIQ 214
+I+E+YC L E+H + + + G+ +++
Sbjct: 859 RILEQYCELQEKHASLLSMCRTINDGIEDVK 889
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,596,088
Number of Sequences: 37544
Number of extensions: 287114
Number of successful extensions: 469
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -