Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F09
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical pr...    38   0.005
AF077546-3|AAC26318.3|  347|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ...    28   6.9  
AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine re...    28   6.9  

>U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical
           protein C13B9.3 protein.
          Length = 515

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = -3

Query: 646 FFPLSVTWTSDTSXALXTAVXVTQAEDGSPVDFSQEISFHADKYEFV 506
           FFP+SV +TS+      T   V +  DGSPV +S E +F+++ +E V
Sbjct: 470 FFPVSVGFTSENLFVPITVQKVVK-NDGSPVTYSVETTFNSENFEIV 515


>AF077546-3|AAC26318.3|  347|Caenorhabditis elegans Hypothetical
           protein T08E11.5 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = -1

Query: 564 GRPLTSLKRSVSTQTNTSLFKQIISCFIFFFV*WEHYVNLFLMIKKTLYYLCIGNKYIL- 388
           G PL+S   S +  T   L   I+         W   +NLF +  + +Y+  +G ++IL 
Sbjct: 211 GTPLSSFTFSETLVTTEKLDFDIVRTAGILIFQWSTLINLFDLRHRRVYFKRVGLEFILQ 270

Query: 387 *IKIMFDFTNVFVDVHRFQNMKLLAINKIIEEYCRL 280
            I+   +    F   + F+ +   AI K +E   R+
Sbjct: 271 VIRNFLEHGRDFDTHYSFEGINEQAIFKALELQTRV 306


>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
           protein F54C4.3 protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 177 NIKMNFKHQQHRVEFPLLRVYFVGSTXTYQRVFRSI 284
           ++K   +H  HR   PLLR+ F G T  +    RS+
Sbjct: 412 HVKGTLEHTGHRFGTPLLRMLFEGFTMDHYTTPRSV 447


>AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein9 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 46  VVIIGFYNFQSTLTVMLVRCFENPXYLIVDEYSI 147
           + +I F+N  S L  +   CF     +I+D+Y+I
Sbjct: 41  IYVIAFFNIISDLLQLFYLCFYFSLSIIIDQYAI 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,657,486
Number of Sequences: 27780
Number of extensions: 302247
Number of successful extensions: 692
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)