Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F08
         (483 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 15   IQSLPSFAF*VKSHIGSPDTATCHGD 92
            +Q  P+  F  K H   P+   CH D
Sbjct: 2262 LQVCPNGLFWNKDHCDWPENTECHPD 2287


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 66  GYQCDSSLKKRKRGGT 19
           GY  DS   K+K+G T
Sbjct: 165 GYSADSCDSKKKKGPT 180


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 278 TRKQRIEAQKRFYNS 322
           T  QR+E +K FY S
Sbjct: 164 TDHQRVELEKEFYYS 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,879
Number of Sequences: 336
Number of extensions: 2072
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)