Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F08
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.1  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    27   2.0  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   3.4  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   3.4  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    25   6.0  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   7.9  

>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 164 VYVDPKLRVIKGIIARDLSRTKAEVTVTSGGVGATNVTLHLK 39
           V+  PK   +KGI++R  S     V VT+  VG T   L LK
Sbjct: 49  VFTSPKTDAVKGIVSRSSSNV-VRVNVTA-KVGRTTHVLKLK 88


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
 Frame = -2

Query: 362  REMTSTT*PNFSKMNYKIVFVLLSVVYVLNIEAKDFVDGTKVNNLLISTEKVVVKG---- 195
            REM  TT P   + N     ++L  + V  I   DF+D    + L+ S  ++   G    
Sbjct: 836  REMFETTLPEIQRTNLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYELWTLGALDN 895

Query: 194  ---YPLIKRDKDYVYVDPKLRVIKGIIARDLSRTKAEVTVTS 78
                  + +      +DP L  +  IIA D   T+  +T+ S
Sbjct: 896  FGKLTTLGKKMSLFPMDPSLSKLI-IIAEDYKCTEEIITIVS 936


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 408  VLNTYWPSFYTRAAFXAEVTLPYRP 482
            V NTYW S+ +     A+  +PY P
Sbjct: 1145 VRNTYWTSYNSAYVQSADAMVPYYP 1169


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 181 FINGYPLTTTFSVEINKLFT 240
           F+NGY LT TF  ++NK F+
Sbjct: 247 FLNGYALTPTFR-DVNKKFS 265


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 350 MSFLERIGRPNSFKFPIVSRIKYVLAVVL 436
           MSFL RI R +S+   I    KY+  V L
Sbjct: 297 MSFLRRISRADSYDHDIRMLAKYLQEVTL 325


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -2

Query: 125 IARDLSRTKAEVTVTSGGVGATNVT---LHLKSE 33
           I RDLSRT   + + + G G   V    LHL S+
Sbjct: 365 IDRDLSRTGTSIIIVTPGTGLYEVNEKMLHLTSK 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,519
Number of Sequences: 5004
Number of extensions: 35022
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)