Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F08
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0772 - 6455042-6458107                                           27   6.0  
02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981           27   7.9  
02_01_0353 + 2545982-2549833                                           27   7.9  

>11_01_0772 - 6455042-6458107
          Length = 1021

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/67 (20%), Positives = 32/67 (47%)
 Frame = -2

Query: 224 ISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIARDLSRTKAEVTVTSGGVGATNVTLH 45
           IS  +     +P + +D+D V ++   + +K + +  +S  +       GG+G T + L+
Sbjct: 150 ISEHRFPQYSFPRLMKDEDLVGMENNRQHLKQLFSHGISALRVISVWGMGGMGKTTLVLN 209

Query: 44  LKSERGE 24
           +  +  E
Sbjct: 210 VYEQHKE 216


>02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981
          Length = 1158

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 236  NNLLISTEKVVVKGYPLIKRDKDYVYVDPKL 144
            N+L I  +  +V  YP +  D D +Y  P+L
Sbjct: 1124 NSLYIGAQDALVAAYPALDDDGDNIYSRPEL 1154


>02_01_0353 + 2545982-2549833
          Length = 1283

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 236  NNLLISTEKVVVKGYPLIKRDKDYVYVDPKL 144
            N+L I  +  +V  YP +  D D +Y  P+L
Sbjct: 1249 NSLYIGAQDALVAAYPALDDDGDNIYSRPEL 1279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,485,695
Number of Sequences: 37544
Number of extensions: 210307
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)