Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F08
(483 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80439-6|AAB37642.1| 564|Caenorhabditis elegans Ezrin/radixin/m... 32 0.25
U80439-5|AAB37643.1| 563|Caenorhabditis elegans Ezrin/radixin/m... 32 0.25
AY643539-1|AAT66915.1| 566|Caenorhabditis elegans ERM-1C protein. 32 0.25
AY643538-1|AAT66914.1| 563|Caenorhabditis elegans ERM-1A protein. 32 0.25
AB107270-3|BAC98358.1| 564|Caenorhabditis elegans ERM-1B protein. 32 0.25
AB107270-2|BAC98357.1| 566|Caenorhabditis elegans ERM-1Asv prot... 32 0.25
AB107270-1|BAC98356.1| 563|Caenorhabditis elegans ERM-1A protein. 32 0.25
AB107269-1|BAC98355.1| 564|Caenorhabditis elegans ERM-1B protein. 32 0.25
AB107268-1|BAC98354.1| 563|Caenorhabditis elegans ERM-1A protein. 32 0.25
AF040646-3|AAK31541.1| 946|Caenorhabditis elegans Hypothetical ... 30 0.77
Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical p... 27 5.4
Z81097-11|CAB03170.2| 485|Caenorhabditis elegans Hypothetical p... 27 5.4
U49947-5|AAU05585.1| 111|Caenorhabditis elegans Hypothetical pr... 27 9.4
>U80439-6|AAB37642.1| 564|Caenorhabditis elegans
Ezrin/radixin/moesin protein 1,isoform b protein.
Length = 564
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = -2
Query: 245 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 120
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 245 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 284
>U80439-5|AAB37643.1| 563|Caenorhabditis elegans
Ezrin/radixin/moesin protein 1,isoform a protein.
Length = 563
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = -2
Query: 245 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 120
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 244 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 283
>AY643539-1|AAT66915.1| 566|Caenorhabditis elegans ERM-1C protein.
Length = 566
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = -2
Query: 245 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 120
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 244 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 283
>AY643538-1|AAT66914.1| 563|Caenorhabditis elegans ERM-1A protein.
Length = 563
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = -2
Query: 245 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 120
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 244 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 283
>AB107270-3|BAC98358.1| 564|Caenorhabditis elegans ERM-1B protein.
Length = 564
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = -2
Query: 245 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 120
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 245 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 284
>AB107270-2|BAC98357.1| 566|Caenorhabditis elegans ERM-1Asv
protein.
Length = 566
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = -2
Query: 245 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 120
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 244 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 283
>AB107270-1|BAC98356.1| 563|Caenorhabditis elegans ERM-1A protein.
Length = 563
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = -2
Query: 245 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 120
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 244 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 283
>AB107269-1|BAC98355.1| 564|Caenorhabditis elegans ERM-1B protein.
Length = 564
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = -2
Query: 245 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 120
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 245 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 284
>AB107268-1|BAC98354.1| 563|Caenorhabditis elegans ERM-1A protein.
Length = 563
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = -2
Query: 245 TKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIA 120
+++ N+ + +K V+K P+ K+ D+V+ P+LR+ K I+A
Sbjct: 244 SEIRNISFNDKKFVIK--PIDKKAHDFVFYAPRLRINKRILA 283
>AF040646-3|AAK31541.1| 946|Caenorhabditis elegans Hypothetical
protein H17B01.4a protein.
Length = 946
Score = 30.3 bits (65), Expect = 0.77
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -2
Query: 278 LNIEAKDFVDGTKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIARDLSRTK 99
L + A+D + K + +KV +G L+ R+ Y YV+P L I I D T
Sbjct: 653 LGLTAQDDIIAVKGKSF---NQKVHSQGRVLVTREVQYKYVNPNLAAIASINRADQHMTI 709
Query: 98 AEVTVTSGGV 69
V + +G +
Sbjct: 710 TLVDIVTGQI 719
>Z81097-12|CAD56590.1| 457|Caenorhabditis elegans Hypothetical
protein K07A1.9b protein.
Length = 457
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 69 RGYQCDSSLKKRKRGGTE 16
R + CDS LKK +RGG E
Sbjct: 250 RRFLCDSPLKKEQRGGIE 267
>Z81097-11|CAB03170.2| 485|Caenorhabditis elegans Hypothetical
protein K07A1.9a protein.
Length = 485
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 69 RGYQCDSSLKKRKRGGTE 16
R + CDS LKK +RGG E
Sbjct: 278 RRFLCDSPLKKEQRGGIE 295
>U49947-5|AAU05585.1| 111|Caenorhabditis elegans Hypothetical
protein C30G4.4a protein.
Length = 111
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 138 NQGYHRQRFIPNESRSHRDKWRCRGY 61
+ G R + +P E+R RD+W C Y
Sbjct: 2 SSGGSRFKVVPVETRYKRDRWTCVDY 27
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,159,901
Number of Sequences: 27780
Number of extensions: 200270
Number of successful extensions: 335
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -