Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F08
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 284 YVLNIEAKDFVDGTKVN 234
           Y LN E+KDF+D  + N
Sbjct: 126 YFLNSESKDFIDFIQKN 142


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 92  VTVTSGGVGATNVTLHLKSERGEGL 18
           V++    +  TN  +++  E+GEGL
Sbjct: 192 VSLAVQAIDRTNTMVYIADEKGEGL 216


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 482 RPVRKCYFC 456
           +P+ KCYFC
Sbjct: 422 KPLDKCYFC 430


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 67  PTPPLVTVTSAFV 105
           P PP+ TVTSA V
Sbjct: 181 PEPPVPTVTSACV 193


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 67  PTPPLVTVTSAFVRDKSLAMIP 132
           PTPP V V SA       A+ P
Sbjct: 52  PTPPSVPVGSAVAGTAGGALFP 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,828
Number of Sequences: 438
Number of extensions: 2403
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)