Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F06
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 157 1e-39
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 157 1e-39
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 102 4e-23
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 84 1e-17
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 38 0.001
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 6.2
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 8.2
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 8.2
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 157 bits (380), Expect = 1e-39
Identities = 70/108 (64%), Positives = 82/108 (75%)
Frame = -3
Query: 583 EPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 404
EPV+L IQ E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR
Sbjct: 726 EPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELR 785
Query: 403 SNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 260
T GQAFPQ VFDHW + GDP +P SKP +V E RKRKGLKE +P
Sbjct: 786 QATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 157 bits (380), Expect = 1e-39
Identities = 70/108 (64%), Positives = 82/108 (75%)
Frame = -3
Query: 583 EPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 404
EPV+L IQ E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR
Sbjct: 726 EPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELR 785
Query: 403 SNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 260
T GQAFPQ VFDHW + GDP +P SKP +V E RKRKGLKE +P
Sbjct: 786 QATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 102 bits (244), Expect = 4e-23
Identities = 45/91 (49%), Positives = 62/91 (68%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
MEPVY+ + P ++ IY +L RRRGHV ++ G+P+++V+A +PV +S GF DL
Sbjct: 841 MEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDL 900
Query: 406 RSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP 314
R +T GQA Q VFDHWQV+PGDP + KP
Sbjct: 901 RVHTQGQAMCQMVFDHWQVVPGDPLDKSIKP 931
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 84.2 bits (199), Expect = 1e-17
Identities = 36/84 (42%), Positives = 53/84 (63%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
M +Y C +Q +G +YGV+++RRG V +E GTP FIVKA +PV ESFGF ++
Sbjct: 863 MLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEI 922
Query: 406 RSNTGGQAFPQCVFDHWQVLPGDP 335
T G A+PQ +F +++L +P
Sbjct: 923 LKRTSGAAYPQLIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 37.5 bits (83), Expect = 0.001
Identities = 18/67 (26%), Positives = 36/67 (53%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
+EP+ I P GG+ G L++R+ + + F ++A +P+N F +++D+
Sbjct: 675 LEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSYSSDI 732
Query: 406 RSNTGGQ 386
R+ T G+
Sbjct: 733 RALTKGK 739
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 361 HWQVLPGDPCEPQSKPYNVVQETRKRK 281
H+Q L GDP + PY VQ RK
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 420 LLPICVPTPADRPSRSAYSTIGRS 349
+LP+ + TPA P + YS G S
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTS 132
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 8.2
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = -2
Query: 416 CRFAFQHRRTGL----PAVR-IRPLAGPPWRPVRTSEQALQRCTGNEKEERIEGR 267
CRF + H + L PA R + WRPV E + NE+++R + R
Sbjct: 42 CRFCWHHIKEDLNGRCPACRRLYTEENVQWRPVTAEEWKMDLHRKNERKKREKER 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,013
Number of Sequences: 5004
Number of extensions: 48626
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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