Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F06
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 154 4e-38
04_01_0103 + 1082077-1082167,1083037-1085477 152 2e-37
01_06_0662 + 30987187-30987277,30987825-30990214 129 1e-30
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 126 1e-29
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 108 4e-24
03_05_0511 + 25056018-25059107 82 4e-16
02_04_0148 - 20198407-20201424 73 1e-13
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 42 3e-04
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 39 0.003
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 37 0.014
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 34 0.097
01_04_0109 + 16112581-16112934 32 0.30
09_06_0142 - 21107878-21109104 28 4.8
04_04_1608 - 34753321-34753332,34753434-34753628,34753868-347539... 28 4.8
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 27 8.4
01_06_0456 + 29521282-29522064 27 8.4
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 154 bits (374), Expect = 4e-38
Identities = 69/106 (65%), Positives = 84/106 (79%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
+EPVYL IQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ L
Sbjct: 726 LEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQL 785
Query: 406 RSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 269
R+ T GQAFPQCVFDHW ++ DP E S+ +VQ+ RKRKGLKE
Sbjct: 786 RAATSGQAFPQCVFDHWDMMTSDPLEAGSQASTLVQDIRKRKGLKE 831
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 152 bits (368), Expect = 2e-37
Identities = 68/106 (64%), Positives = 83/106 (78%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
+EPVYL IQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ L
Sbjct: 726 LEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQL 785
Query: 406 RSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 269
R+ T GQAFPQCVFDHW ++ DP E S+ +V + RKRKGLKE
Sbjct: 786 RAATSGQAFPQCVFDHWDMMTSDPLEVSSQANQLVLDIRKRKGLKE 831
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 129 bits (312), Expect = 1e-30
Identities = 58/90 (64%), Positives = 71/90 (78%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
+EPVYL IQ PE A+GGIY VLN++RGHVFEE Q GTP++ +KAYLPV ESFGFT+ L
Sbjct: 724 LEPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFTSTL 783
Query: 406 RSNTGGQAFPQCVFDHWQVLPGDPCEPQSK 317
R+ T GQAFP VFDHW++L DP EP ++
Sbjct: 784 RAATSGQAFPLFVFDHWEMLSVDPLEPGTR 813
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 126 bits (304), Expect = 1e-29
Identities = 56/106 (52%), Positives = 73/106 (68%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
MEP+Y IQ P+ AVG +YGVLN R G + EES+ GTP+ ++ YLPV +SF FT L
Sbjct: 736 MEPMYQVDIQVPKTAVGNVYGVLNSRNGELVEESERTGTPLSNLRFYLPVAKSFDFTEKL 795
Query: 406 RSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 269
R+ T GQAFPQC+F HWQ + DP + S+ V+ + RKRKGLK+
Sbjct: 796 RAETSGQAFPQCIFHHWQTMRSDPFQEGSEAAKVITDIRKRKGLKD 841
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 108 bits (259), Expect = 4e-24
Identities = 59/118 (50%), Positives = 72/118 (61%), Gaps = 12/118 (10%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
MEPVY IQ P V IY VL+RRRGHV + GTP+++VKA+LPV ESFGF DL
Sbjct: 852 MEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVIESFGFETDL 911
Query: 406 RSNTGGQAFPQCVFDHWQVLPGD---------PCEP---QSKPYNVVQETRKRKGLKE 269
R +T GQAF VFDHW ++PGD P EP Q + +TR+RKG+ E
Sbjct: 912 RYHTQGQAFCLSVFDHWAIVPGDPLDKNIVLRPLEPAPIQHLAREFMVKTRRRKGMSE 969
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 81.8 bits (193), Expect = 4e-16
Identities = 37/84 (44%), Positives = 49/84 (58%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
+E +Y C + P +G Y VL+R+R V +E GT +F V AYLPV ES GF+ +L
Sbjct: 889 VEAMYFCELTTPTEQLGATYAVLSRKRARVLKEEMQEGTSLFTVHAYLPVAESVGFSNEL 948
Query: 406 RSNTGGQAFPQCVFDHWQVLPGDP 335
RS T G A V HW+ +P DP
Sbjct: 949 RSVTAGAASALLVLSHWEAIPEDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 73.3 bits (172), Expect = 1e-13
Identities = 34/84 (40%), Positives = 45/84 (53%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
+EP+Y C + P +G +Y VL R V +E GT +F V AYL V ES F+ L
Sbjct: 865 VEPMYFCELTTPTEQLGSMYAVLGNCRARVLKEEMQEGTSLFTVHAYLSVAESSEFSKKL 924
Query: 406 RSNTGGQAFPQCVFDHWQVLPGDP 335
R+ T G A F HW+ +P DP
Sbjct: 925 RNATAGAASALLAFSHWETVPQDP 948
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/81 (30%), Positives = 40/81 (49%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
+EP+ + PE +G + G LN RRG V G + +V A++P+ E F + + L
Sbjct: 652 LEPIMKVEVITPEEHLGDVIGDLNSRRGQVNSFGDKPG-GLKVVDAFVPLAEMFQYVSTL 710
Query: 406 RSNTGGQAFPQCVFDHWQVLP 344
R T G+A + V+P
Sbjct: 711 RGMTKGRASYTMQLAKFDVVP 731
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
+EPV ++ P G + G +N+R+G + Q +V ++P+N FG++ L
Sbjct: 674 LEPVMKVELKVPTEFQGTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLNNMFGYSTAL 731
Query: 406 RSNTGGQ 386
RS T G+
Sbjct: 732 RSMTQGK 738
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 432 SRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD 277
S S +P +P P D PS+ +T G S+ +N SP+ +Y K G D
Sbjct: 19 STSARVPGVIPKPIDLPSQRGTATQGDKSMPPASNAWGSPSVMYPKNGGGSD 70
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 33.9 bits (74), Expect = 0.097
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = -3
Query: 583 EPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 404
EP + ++ PE +G + +L +RRG + + ++K +P G +
Sbjct: 504 EPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLIGLRNAVL 563
Query: 403 SNTGGQAFPQCVFDHWQVLPGD 338
+ + G A +FD + GD
Sbjct: 564 TASRGTAILNTIFDSYGPWAGD 585
>01_04_0109 + 16112581-16112934
Length = 117
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -1
Query: 435 MSRSVLLP--ICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGK 280
M+ VL P + +P+PA R R+ +T R++ +++ R PTT +R +G+
Sbjct: 1 MATEVLRPHNVLLPSPAQRRIRATAATHQRTANNHQSDARTKPTTAGSRRRQGR 54
>09_06_0142 - 21107878-21109104
Length = 408
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 311 VGLALRFARVSREDLPMVEYALREGLS-AGVGTQIGSKTER 430
V L L++ E LP++ A REG++ AGV +GS R
Sbjct: 171 VDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASR 211
>04_04_1608 -
34753321-34753332,34753434-34753628,34753868-34753972,
34754176-34754219,34754645-34754700,34755986-34756146
Length = 190
Score = 28.3 bits (60), Expect = 4.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 73 WFLIXLVACAIFSCCLTCASAL 138
WF+ + +F C LTC+ A+
Sbjct: 54 WFIYTFIGLGVFMCLLTCSGAI 75
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 263 PRLNSIFGQIVNYIVKAN*KNVSIRKALHACLFSTTHVPHHIKA 132
PR + +++NYIV + K+ + S +PHH+K+
Sbjct: 389 PRTREEWERVLNYIVSTSEKDNDLEVMNKILFMSYNDLPHHMKS 432
>01_06_0456 + 29521282-29522064
Length = 260
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 307 RCRACSEVRTGLQGGPANGRIRTAGRPVRRCWNANR 414
R C +G +GG R R AG RRC A+R
Sbjct: 11 RAWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADR 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,146,497
Number of Sequences: 37544
Number of extensions: 340201
Number of successful extensions: 927
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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