Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F06
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 208 2e-54
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 208 2e-54
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 99 2e-21
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 99 2e-21
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 64 9e-11
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 31 0.61
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 3.2
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 208 bits (509), Expect = 2e-54
Identities = 93/109 (85%), Positives = 99/109 (90%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
+EPVYL IQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADL
Sbjct: 735 LEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADL 794
Query: 406 RSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 260
RSNTGGQAFPQCVFDHWQVLPGDP E +KP +V +TRKRKGLKEG+P
Sbjct: 795 RSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 208 bits (509), Expect = 2e-54
Identities = 93/109 (85%), Positives = 99/109 (90%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
+EPVYL IQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADL
Sbjct: 735 LEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADL 794
Query: 406 RSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 260
RSNTGGQAFPQCVFDHWQVLPGDP E +KP +V +TRKRKGLKEG+P
Sbjct: 795 RSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 99.1 bits (236), Expect = 2e-21
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 12/118 (10%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
MEP Y + P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DL
Sbjct: 832 MEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDL 891
Query: 406 RSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 269
R +T GQAF F HWQ++PGDP + Q P+ + +TR+RKGL E
Sbjct: 892 RIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 949
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 99.1 bits (236), Expect = 2e-21
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 12/118 (10%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
MEP Y + P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DL
Sbjct: 707 MEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDL 766
Query: 406 RSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 269
R +T GQAF F HWQ++PGDP + Q P+ + +TR+RKGL E
Sbjct: 767 RIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 824
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 63.7 bits (148), Expect = 9e-11
Identities = 31/81 (38%), Positives = 43/81 (53%)
Frame = -3
Query: 577 VYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSN 398
+Y C + A+G ++ VL++R+ V E T +F V + +PV ESF F LR
Sbjct: 758 MYRCTVTTASQALGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCDQLRKF 817
Query: 397 TGGQAFPQCVFDHWQVLPGDP 335
T G A Q F HWQV+ DP
Sbjct: 818 TSGMASAQLQFSHWQVIDEDP 838
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/55 (43%), Positives = 28/55 (50%)
Frame = -3
Query: 499 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 335
V E T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 31.1 bits (67), Expect = 0.61
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -3
Query: 586 MEPVYLCXIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 407
+EP+ P G + L +R + G I +A P+++ FG+T++L
Sbjct: 643 LEPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSEL 700
Query: 406 RSNTGGQ 386
RS T G+
Sbjct: 701 RSLTEGK 707
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 344 REDLPMVEYALREGLSAGVGTQIGSKTERLID 439
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,800,894
Number of Sequences: 27780
Number of extensions: 294879
Number of successful extensions: 748
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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