Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F04
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 196 2e-51
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 196 2e-51
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 191 1e-49
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 31 0.16
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.87
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 27 2.0
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.6
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 26 4.6
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 26 4.6
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 6.1
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 6.1
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 25 8.1
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 196 bits (479), Expect = 2e-51
Identities = 90/144 (62%), Positives = 107/144 (74%)
Frame = -1
Query: 611 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 432
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 431 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 252
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 251 XVFCLKPGRNYCHVGRLSHEIGWK 180
V LKPGR YC VGRLS E+GWK
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWK 149
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 172 DVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA 59
D+V KLE++RK K+ Y+ KL + K A K + +
Sbjct: 152 DIVSKLEERRKVKSA--AFYQAKLAKQKKIASAKAASS 187
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 196 bits (479), Expect = 2e-51
Identities = 90/144 (62%), Positives = 107/144 (74%)
Frame = -1
Query: 611 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 432
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 431 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 252
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 251 XVFCLKPGRNYCHVGRLSHEIGWK 180
V LKPGR YC VGRLS E+GWK
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWK 149
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 172 DVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 20
D+V KLE++RK K+ Y+ KL + K A +K +P + +GY
Sbjct: 152 DIVAKLEERRKVKSA--AFYQAKLAKQKKIAS---AKEASPVNQKLSQFGY 197
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 191 bits (465), Expect = 1e-49
Identities = 85/144 (59%), Positives = 105/144 (72%)
Frame = -1
Query: 611 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 432
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 431 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 252
NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 251 XVFCLKPGRNYCHVGRLSHEIGWK 180
V LKP R YC +GRLS E+GWK
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWK 149
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 142 KGKAVKRVAYEKKLKRITKDAGEKVSKATTP 50
KGK V R+ Y+ K + D+GE+++K P
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVDGP 570
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.87
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 584 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 480
H L + AV K++ G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -2
Query: 163 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFT 44
R + KR+ K +R+AYE+ LKR K EK +K++ T
Sbjct: 647 RIAQQKREEK--RRLAYEESLKRHAKKLHEKKTKSSQDAT 684
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 151 DKRKGKAVKRVAYEKKLKRITKDAGE-KVSKATTPFTTIIQSYG 23
DKR+ + + YEK+L+ + K+ E + P ++I+ YG
Sbjct: 18 DKRETIYIDLLNYEKQLRNLNKNTREDSLQTNLNPLLSLIKKYG 61
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 501 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 638
D+ A N + L RQ QQM T +YGL+ KAR N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 400 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTLFPSRRTLAMTA 564
AL+ G ++L+R+ND + +KK+ + LI ++ T R L T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 298 GHPSYVRSLLRAFLPRSVLCGIMP 369
G+ SY+ + L+AFLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 172 DVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEK 71
D K E+KR+ K K+ EKK K+ K+ +K
Sbjct: 439 DEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 32 LDDGSEWCCRLRHLLTSILGDPLKFLFIGNSLNSL 136
L D E R+RH S++G+P+ + +I ++ L
Sbjct: 408 LPDRYEEASRVRHCALSLVGEPIFYPYINEFVSML 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,314
Number of Sequences: 5004
Number of extensions: 58098
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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