Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F04
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   200   8e-52
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   200   8e-52
AF026213-10|AAB71301.1|  478|Caenorhabditis elegans Protein kina...    29   2.5  
AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinas...    29   2.5  
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  200 bits (488), Expect = 8e-52
 Identities = 90/148 (60%), Positives = 112/148 (75%)
 Frame = -1

Query: 623 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 444
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 443 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 264
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 263 XXXXXVFCLKPGRNYCHVGRLSHEIGWK 180
                 F L+P R +C VGRLSHE+GW+
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQ 148



 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 175 RDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGYN 17
           +DVV KLE KRK K       +KK+ ++   A +  +     +  II++ GYN
Sbjct: 150 QDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGYN 202


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  200 bits (488), Expect = 8e-52
 Identities = 90/148 (60%), Positives = 112/148 (75%)
 Frame = -1

Query: 623 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 444
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 443 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 264
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 263 XXXXXVFCLKPGRNYCHVGRLSHEIGWK 180
                 F L+P R +C VGRLSHE+GW+
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQ 148



 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 175 RDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGYN 17
           +DVV KLE KRK K       +KK+ ++   A +  +     +  II++ GYN
Sbjct: 150 QDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGYN 202


>AF026213-10|AAB71301.1|  478|Caenorhabditis elegans Protein kinase
           protein 9, isoform a protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 561 CRQTAQQMTTAIDHYGLIAKARHFHNETHRPAE 659
           C   AQ +  A ++YG +   +HF+N+T  P+E
Sbjct: 442 CAVLAQMLENATENYGYLIP-KHFNNQTRDPSE 473


>AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinase
           protein 9, isoform b protein.
          Length = 615

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 561 CRQTAQQMTTAIDHYGLIAKARHFHNETHRPAE 659
           C   AQ +  A ++YG +   +HF+N+T  P+E
Sbjct: 579 CAVLAQMLENATENYGYLIP-KHFNNQTRDPSE 610


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 193 KLDGNXRDVVRKLEDKRKGKAVKRVAYEKKLKRI-TKDAGEKVSK 62
           K+D +  +    LE KRK  A+ R  ++ K+ +I ++D  EK+ K
Sbjct: 173 KVDSHNSEKKNLLEKKRKDLAIARKMHKLKISKILSEDHSEKMKK 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,504
Number of Sequences: 27780
Number of extensions: 339823
Number of successful extensions: 928
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)