Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_F03
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 31 0.23
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 29 0.54
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 27 2.9
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.9
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 27 2.9
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 6.7
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 6.7
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 26 6.7
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 8.8
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 8.8
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 8.8
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 30.7 bits (66), Expect = 0.23
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 569 KALAEALNENEILHKSLSLLTEENLK-YKKLLDEANSFIEVCKELMSDTADDT 414
K L EAL LS + E N K YK LLD+ N K L S+T T
Sbjct: 1038 KTLREALQSKTNNIDHLSTILERNRKEYKSLLDDYNQLRARYKNLQSNTPQST 1090
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 29.5 bits (63), Expect = 0.54
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = -3
Query: 653 LDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLL 477
L KW + L PS+ ++ K +A+ + E EIL K +L+ E+NL +KLL
Sbjct: 2140 LSKWSTPTKLV--EPSQ--FRASPRKVDQAVVLSSEEKEILQKKYALIAEDNLIARKLL 2194
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 647 KWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLL 477
KW + L V Y + A + A+N IL KS + + E NLK + +L
Sbjct: 653 KWKKDGQPWLVVAEHNYGEGSAREHAALQPRAMNGRIILTKSFARIHETNLKKQGVL 709
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -3
Query: 611 PSETYWKVVAEKRRKALAEAL-NENEILHKSLSLLTEENLKYKKLLDEAN 465
PS+ + + EK ++ AE L +ENE L S L + LK +KL+D N
Sbjct: 351 PSDNGVQDLQEKMQEVNAEKLQHENEKLESSHELGSIRTLKAQKLIDLDN 400
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 662 QVNLDKWISENDLC-LEVPSETYWKVVAEK 576
++N D W ENDL ++P E Y K+ + +
Sbjct: 76 KINFDAWSFENDLSDNDMPKENYLKIFSNQ 105
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 548 NENEILHKSLSLLTEENLKYKKLL 477
NENEIL +S L EE + K LL
Sbjct: 509 NENEILSAQVSALREEIVSLKTLL 532
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 6.7
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -3
Query: 728 SIKXYFSPRNIVTKKXNSSKSIQVNLDKWISENDLCLEVPS-ETYWKVVAEKRRKALAEA 552
+++ + SP I+ S ++I +L + + + L V S WK A +R ++
Sbjct: 198 NVEVHVSPNAILNACWLSERNIHTDLYETHASSPNSLLVTSLAEIWKSEASRRNLTSSDE 257
Query: 551 LNENEILHKSLSLLTEEN 498
N LH+S L EE+
Sbjct: 258 TNSFSKLHQSQFGLKEES 275
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = -3
Query: 596 WKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTADD 417
W V++ +LN+N ++K L T+E L K L+ + F+ + +E +D
Sbjct: 848 WDEVSDYTLLYQPYSLNKNPPINKIQPLTTDEMLYPKMLVGIDSEFVALQQEETEVRSDG 907
Query: 416 TGIEIDDTKI 387
T I +K+
Sbjct: 908 TKSTIKPSKL 917
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = -3
Query: 590 VVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 429
++ + R+ AL + L ++ ++LSL+++ L+ LD +I E+MSD
Sbjct: 685 ILMQLRKAALHQLLFRSQYNLETLSLMSKRILREDAYLDANPQYIFEDMEVMSD 738
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 226 LIHGLIIMFLRSDSIRKNELSDEIDKNEA 140
L+HG + + S IR+ EL D +D N +
Sbjct: 379 LLHGSFFLAVLSVDIRRLELQDFLDSNSS 407
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = -3
Query: 665 IQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHK--SLSLLTEENLK 492
+QVNL + + L E PS+ + + + N+N + + +++ + E +K
Sbjct: 250 LQVNLCRIL----LACERPSDNPTRATLIRVLDRILSLPNDNSNVQQVNAVNAILFEAIK 305
Query: 491 YKKLLDEANSFIEVCKELMSDTADD 417
L+DE++S E C + ++D D
Sbjct: 306 LAFLVDESHSLYEKCMDRLADMIAD 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,807
Number of Sequences: 5004
Number of extensions: 43239
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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