Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F03
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1037 + 30316557-30316692,30317104-30317180,30317287-303173...    32   0.43 
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217           31   0.75 
05_01_0146 - 953957-956278,956468-956786,957185-957213                 30   1.7  
05_04_0035 + 17378541-17381276                                         28   7.0  
02_05_0469 + 29297209-29297527,29297847-29297961,29298060-292982...    28   7.0  
03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092...    28   9.2  

>04_04_1037 +
           30316557-30316692,30317104-30317180,30317287-30317353,
           30317761-30317813,30317906-30318322
          Length = 249

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -3

Query: 599 YWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTAD 420
           Y K + EK +K ++   N +  L  + S +T+ NL     +D A    E   ELM   +D
Sbjct: 126 YLKEILEKAQKNISLDANGSANLSSTRSQITDINLALSGFMDNATQVQEENNELMKPISD 185

Query: 419 D 417
           D
Sbjct: 186 D 186


>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
          Length = 504

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = -3

Query: 605 ETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDE 471
           E Y +VV +++R+A A  L E E + ++   L E+ LK+++  D+
Sbjct: 215 EAYLQVVGQEKREAEAMKLLEEEQMQRTAKELLEQYLKFRQEADD 259


>05_01_0146 - 953957-956278,956468-956786,957185-957213
          Length = 889

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -3

Query: 581 EKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTADDTGIEI 402
           E   +A +EALN  +  +  +  LTEEN+K    L+E     E  K  + D       E 
Sbjct: 453 EAAEEAASEALNNEKAANVKIEGLTEENVKLISELNETRDREEKEKRAVEDLTAALSEES 512

Query: 401 DDTK 390
           D  K
Sbjct: 513 DKAK 516


>05_04_0035 + 17378541-17381276
          Length = 911

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 171 SFLRIESDLRNIIISPCIKXXXXXXXXXXFHKPQHRSLIQAVFVFGSVI 317
           SF+ I S+  N++++ C K          FH+   +++   V  F ++I
Sbjct: 359 SFIGINSESYNVMVNQCFKKCKFHEAIEVFHRQPRKNVQMDVGCFNNII 407


>02_05_0469 +
           29297209-29297527,29297847-29297961,29298060-29298255,
           29298427-29298540,29298695-29298868,29299326-29299520,
           29299666-29299788,29299892-29300004,29300117-29300237,
           29300363-29300623,29301712-29301921
          Length = 646

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = -3

Query: 689 KKXNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILH-----K 525
           K  N   ++  +L   +S +D  +  P E   +V A+KR K L   L+ +   H      
Sbjct: 406 KLINDVMALPEDLKTKLSIDDELVSSPKEALSRVSADKRNKHLKSGLSHSYSTHGDKNIV 465

Query: 524 SLSLLTEENLKY 489
            LS LTE N ++
Sbjct: 466 KLSKLTETNRRF 477


>03_02_0971 -
           12807981-12808094,12808949-12809053,12809236-12809295,
           12809399-12809537,12809648-12809832,12809926-12810009,
           12810093-12810215,12810617-12810796,12811017-12811092,
           12811178-12811277,12811355-12811430,12812155-12812244,
           12812342-12812449,12813583-12813651,12813751-12813921,
           12814002-12814072,12814263-12814360,12814659-12814719,
           12814935-12814971,12815217-12815308,12815428-12815549,
           12816281-12816414
          Length = 764

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = -3

Query: 581 EKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTAD 420
           EK+ KALAEA  EN  L +S S     +++  +L D  ++  +VC  + SD+ +
Sbjct: 690 EKKEKALAEA--ENRPLPQSFS---SNDVRALRLSDFKHAHEQVCASVSSDSTN 738


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,928
Number of Sequences: 37544
Number of extensions: 210139
Number of successful extensions: 457
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)