Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_F01
         (714 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CCA4 Cluster: Chromosome undetermined scaffold_167, w...    33   5.3  

>UniRef50_A0CCA4 Cluster: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1005

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = -3

Query: 313 SNILILWVNVFDVEFVELFVK-PKECYLNNLIWNILNQVIILLSENF 176
           S+I  LW ++ D EF++L ++   +C   N++WN+L ++  +  ++F
Sbjct: 258 SDIKRLWSSILDPEFIQLLLRLLPQC---NILWNVLGKICKIFKKHF 301


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,541,447
Number of Sequences: 1657284
Number of extensions: 9393747
Number of successful extensions: 22760
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 21743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22758
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)