Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_E20
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 166 4e-42
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 33 0.034
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 30 0.32
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 28 1.7
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.2
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 3.9
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 27 3.9
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 3.9
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 5.2
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 5.2
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 26 6.9
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 26 6.9
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 26 6.9
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 9.1
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 166 bits (403), Expect = 4e-42
Identities = 82/237 (34%), Positives = 149/237 (62%), Gaps = 3/237 (1%)
Frame = -2
Query: 765 RIXYFHGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAELFIDC 586
R+ Y + +++ +G+ + K L++KGGDW +N+LKAY+ IY +++R++S AA+L +DC
Sbjct: 157 RLAYVYA-DMRVVGQLLEKLKPLIEKGGDWERKNRLKAYQGIYLMSIRNFSGAADLLLDC 215
Query: 585 VSTFESYELVDFGTIIQYCVLACALALERHALQSAL--RRQGAAVQALRSRFPELRELVE 412
+STF S EL+ + +++Y V++ A++L+R +++ + + AV L +
Sbjct: 216 MSTFSSTELLPYYDVVRYAVISGAISLDRVDVKTKIVDSPEVLAVLPQNESMSSLEACIN 275
Query: 411 SLHECRYADFLKSLAWVE-TQICVDPVFHPHYQHYVREARIKAYVQLLRAYRSLSLDNIA 235
SL+ C Y+ F ++LA VE + D HY++YVRE R +AY QLL +YR+LS+D++A
Sbjct: 276 SLYLCDYSGFFRTLADVEVNHLKCDQFLVAHYRYYVREMRRRAYAQLLESYRALSIDSMA 335
Query: 234 DTFGVTREFIEEEISTFTAAGRLQCRIDAVAGCVVTGAGRGADADRSQLYQATIRRG 64
+FGV+ ++I+ ++++F +L C ID V G V T ++++ YQ +++G
Sbjct: 336 ASFGVSVDYIDRDLASFIPDNKLNCVIDRVNGVVFT----NRPDEKNRQYQEVVKQG 388
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 33.5 bits (73), Expect = 0.034
Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Frame = -2
Query: 483 ALRRQGAAVQALRSRFPELRELVESLHECR-YADFLKSLAWVETQICVDPVFHPHYQHYV 307
A+R G ++A+R+ + HE R ADF K+L + ++ DP+ H
Sbjct: 274 AIRYAGRDIEAMRA--------IAQAHENRSLADFEKALQDYKPELASDPIIRSHLSSLY 325
Query: 306 REARIKAYVQLLRAYRSLSLDNIADTFGVTREFIEEEISTFTAAGRLQCRIDAVAGCVV 130
+ ++++ + + + +IA+ G++ +E ++S +D +GC++
Sbjct: 326 DNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKIFYGILDQGSGCLI 384
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 30.3 bits (65), Expect = 0.32
Identities = 14/76 (18%), Positives = 36/76 (47%)
Frame = +1
Query: 187 SRNLLFYELPGDTKRVSNIIQAERSVGAQQLNICLDASLTHIVLVMRVEYWVYTDLSFHP 366
+R L+ + + + + + +++ + + + C +L H V R+ +V ++ ++H
Sbjct: 730 NRELIQFSMADNIRSIPSVVDGLKPGQRKVVYYCFKRNLVHETKVSRLAGYVASETAYHH 789
Query: 367 SKAFQEISISTLMQRF 414
+ E +I L Q F
Sbjct: 790 GEVSMEQTIVNLAQNF 805
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 27.9 bits (59), Expect = 1.7
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
Frame = -2
Query: 537 QYCVLACALALERHALQSALRRQGAAVQA-LRSRFPELRELVESLHECRYADFLKSLAWV 361
++C C+ +H S Q Q L + P L +LVE LH C F+ L
Sbjct: 766 RFCEATCS---NKHIHPSEFEGQKNLWQVILPNVVPNLLKLVEQLHCCYEPSFISGLGMH 822
Query: 360 ETQICVDPVFHPHYQHYVREARIKAYVQLLRAYR-SLSLDNIADTFG----VTREFIEEE 196
+ I + + H V + +++ +Y+ +S + + +FG RE+
Sbjct: 823 NSSILQKSIVERFWLHGVSQISKNQFLE--ESYKMDVSANKLIHSFGHFLRRLREYCYYA 880
Query: 195 ISTFTAAGR 169
I++F G+
Sbjct: 881 IASFMRLGQ 889
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 533 TVFSLVPWPLKGMLYNLPYAGKVLQYKLYA 444
T F L WP +Y PY G V Q KLY+
Sbjct: 23 TFFHLYVWPFALFVY--PYIGYVYQNKLYS 50
>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/59 (22%), Positives = 26/59 (44%)
Frame = -2
Query: 750 HGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAELFIDCVSTF 574
H C V ++ K ELV K W++ +++ A C +D++ +++ F
Sbjct: 76 HSCGVNDVTDLGGKDDELVGKRKKWKTEVRIETSMA-ECNGGKDFTEMTRIYLSIRKNF 133
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 732 EMGKAINKAHELVDKGGDWRSRNKLKAYEAIY 637
+ K I K HE + GGDWR + L A + Y
Sbjct: 269 DASKRIFKEHESMCYGGDWRHTDGLLATCSFY 300
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 639 YCLAVRDYSHAAELFIDCVSTFESYE 562
Y LA + S AA L+ CV FES E
Sbjct: 204 YSLAAKIASSAATLYDSCVHAFESME 229
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/61 (19%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +1
Query: 211 LPGDTKRVSNIIQAERSVG---AQQLNICLDASLTHIVLVMRVEYWVYTDLSFHPSKAFQ 381
L GD ++ + ++++ +Q L + + + ++ + ++ ++Y ++ D+S PSK F
Sbjct: 1401 LVGDPNQLPPTVLSKKAASLNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFY 1460
Query: 382 E 384
+
Sbjct: 1461 D 1461
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -3
Query: 638 IALLLEITVMQLNYSLTVCQLLNLMN-WLILVQSSSTV---FSLVPWPLKGMLYNLPYAG 471
I LLL ++ L+V ++L+L N W ++ + + L W G+ NLP+AG
Sbjct: 2181 IILLLIFFIVVWAVLLSVIKILSLNNVWFPVIFGLGLICPRWCLEFWSSSGLGINLPWAG 2240
Query: 470 K 468
K
Sbjct: 2241 K 2241
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2
Query: 380 KKSAYLHSCRDSTSSLNSGKRERRACT 460
KKSA S DST SGKR R + T
Sbjct: 84 KKSASSTSKHDSTGVKTSGKRSRESST 110
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 342 DPVFHPHYQHYVREAR 295
DP +HP+YQH + EAR
Sbjct: 80 DP-YHPYYQHKLTEAR 94
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 160 TLKTAGRRESRNLLFYELPGDTKRVSNIIQ 249
+L+ R+S++ + PG TKR+S I++
Sbjct: 164 SLRNVALRKSKSAIVGNYPGVTKRISEIVR 193
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.4 bits (53), Expect = 9.1
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -2
Query: 366 WVETQICVDPVFHPHYQHYV 307
W+ETQ+ + F PH+ ++
Sbjct: 872 WIETQVLLLATFAPHWSEHI 891
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,696
Number of Sequences: 5004
Number of extensions: 57099
Number of successful extensions: 166
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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