Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_E20
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0296 + 24216284-24216428,24216631-24216745,24217321-242174... 186 1e-47
02_04_0498 + 23480930-23481186,23483615-23483705,23483790-234839... 184 9e-47
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91... 65 7e-11
04_04_0828 - 28473753-28474801,28474956-28475096,28475203-28475554 33 0.25
03_01_0052 - 450258-450285,450345-450457,450540-450746,451021-45... 33 0.25
11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876 32 0.44
10_03_0048 - 7360230-7360805,7361480-7361791,7361853-7362179 32 0.44
01_06_1065 - 34238812-34239307,34239583-34240154,34241687-342419... 32 0.44
03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032 31 1.3
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 30 2.4
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 30 2.4
11_06_0769 + 27156153-27156313,27156593-27156611 29 3.1
04_03_0567 + 17217581-17217741,17218020-17218047 29 3.1
10_02_0145 - 5817684-5817751,5817850-5817955,5818145-5818222,581... 29 5.4
08_01_0623 - 5435075-5435381,5435461-5435844,5436240-5436571 29 5.4
02_02_0218 - 7975237-7975934,7976896-7977721 28 7.2
>04_04_0296 +
24216284-24216428,24216631-24216745,24217321-24217411,
24217495-24217640,24217745-24217964,24218037-24218145,
24218273-24218441,24218546-24218720
Length = 389
Score = 186 bits (454), Expect = 1e-47
Identities = 91/224 (40%), Positives = 144/224 (64%)
Frame = -2
Query: 729 MGKAINKAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAELFIDCVSTFESYELVDF 550
+ K+I+KA +L ++GGDW +N+LK YE +YC+A R++ AA LF+D +STF +YEL +
Sbjct: 157 ISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKAASLFLDSISTFTTYELFPY 216
Query: 549 GTIIQYCVLACALALERHALQSALRRQGAAVQALRSRFPELRELVESLHECRYADFLKSL 370
T I Y VL ++L+R +L++ + + A+ + P L E + SL+ C+Y F +
Sbjct: 217 DTFIFYTVLTSVISLDRVSLKAKVV-DAPEILAVIGKVPHLSEFLNSLYNCQYKSFFAAF 275
Query: 369 AWVETQICVDPVFHPHYQHYVREARIKAYVQLLRAYRSLSLDNIADTFGVTREFIEEEIS 190
+ + QI +D PH+++Y+RE R Y Q L +Y+S++++ +A FGVT +FI+ E+S
Sbjct: 276 SGLTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLELS 335
Query: 189 TFTAAGRLQCRIDAVAGCVVTGAGRGADADRSQLYQATIRRGRF 58
F AAG+L C+ID VA CV+ DA R+ YQATI++G F
Sbjct: 336 RFIAAGKLHCKIDKVA-CVL--ETNRPDA-RNAFYQATIKQGDF 375
>02_04_0498 +
23480930-23481186,23483615-23483705,23483790-23483935,
23484029-23484248,23484314-23484422,23484518-23484686,
23484801-23484975
Length = 388
Score = 184 bits (447), Expect = 9e-47
Identities = 91/236 (38%), Positives = 146/236 (61%)
Frame = -2
Query: 765 RIXYFHGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAELFIDC 586
+I FH + + K+I+KA L ++GGDW +N+LK YE +Y +A R++ AA LF+D
Sbjct: 145 QIGLFH-MDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYFMATRNFKKAASLFLDS 203
Query: 585 VSTFESYELVDFGTIIQYCVLACALALERHALQSALRRQGAAVQALRSRFPELRELVESL 406
+STF +YEL + T + Y V+ + L+R +L+ + + A+ + P L E + SL
Sbjct: 204 ISTFTTYELFPYDTFVFYTVITSIITLDRVSLKQKVV-DAPEILAVIGKVPHLSEFLNSL 262
Query: 405 HECRYADFLKSLAWVETQICVDPVFHPHYQHYVREARIKAYVQLLRAYRSLSLDNIADTF 226
+ C+Y F + + + QI +D PH+++Y+RE R Y Q L +Y+S++++ +A F
Sbjct: 263 YNCQYKSFFVAFSGMTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMAAAF 322
Query: 225 GVTREFIEEEISTFTAAGRLQCRIDAVAGCVVTGAGRGADADRSQLYQATIRRGRF 58
GVT +FI++E+S F AAG+L C+ID VAG + T DA R+ YQATI++G F
Sbjct: 323 GVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNR---PDA-RNAFYQATIKQGDF 374
>03_01_0115 -
915142-915321,915397-915631,916301-916386,916474-916590,
917271-917591,918386-918772
Length = 441
Score = 64.9 bits (151), Expect = 7e-11
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 2/174 (1%)
Frame = -2
Query: 663 KLKAYEAIYCLAVRDYSHAAELFIDCVSTF-ESY-ELVDFGTIIQYCVLACALALERHAL 490
KL+A + LA + Y AA F++ +Y E++ + Y L + +R L
Sbjct: 215 KLRAAAGLAYLATKKYKLAARKFVETGHELGNNYSEVIAPQDVAVYGALCALASFDRSDL 274
Query: 489 QSALRRQGAAVQALRSRFPELRELVESLHECRYADFLKSLAWVETQICVDPVFHPHYQHY 310
+S + + + PE+RELV + RY L+ L ++T + +D H H +
Sbjct: 275 KSKVI-DNSNFRNFLELVPEVRELVNDFYSSRYGSCLEHLEKLKTNLLLDIHLHDHVETL 333
Query: 309 VREARIKAYVQLLRAYRSLSLDNIADTFGVTREFIEEEISTFTAAGRLQCRIDA 148
+ R KA +Q + S+ L+ +A F + +E+E++ ++Q RID+
Sbjct: 334 YMDIRHKAIIQYTLPFISVDLNTMAAAFMTSVSMLEKELAALITENKIQARIDS 387
>04_04_0828 - 28473753-28474801,28474956-28475096,28475203-28475554
Length = 513
Score = 33.1 bits (72), Expect = 0.25
Identities = 22/52 (42%), Positives = 27/52 (51%)
Frame = +2
Query: 74 IVAWYSCDRSASAPRPAPVTTQPATASMRH*RRPAAVKVEISSSMNSLVTPN 229
+ A C RSA A P V A AS R R AAV E SSS+ ++ TP+
Sbjct: 336 VEALSGCIRSAEAQSPEGVNRHLAGASTRVATRCAAVLREASSSVAAMTTPS 387
>03_01_0052 -
450258-450285,450345-450457,450540-450746,451021-451080,
451281-451376,451495-451551,451786-451845,452774-452853,
454265-454367,454530-454571
Length = 281
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 599 YSLTVCQLLNLMNWLILVQSSSTVFSLVPWPLKGMLYNLPYAGKVLQYKL 450
YS + Q + +N I +SS + L P K ++YNL Y +L Y L
Sbjct: 38 YSTNMTQAMGAVNSCIPSLTSSDILELTSVPFKNIVYNLAYMFWILGYSL 87
>11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876
Length = 528
Score = 32.3 bits (70), Expect = 0.44
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 26 HSLVS*PG*GVNRPRRIVAWYSCDRS--ASAPRPAPVTTQPATASMRH*RRPAAVKVEIS 199
HS V+ G P+ V W + D + A+A RP P T P A +RPAA
Sbjct: 369 HSAVA--GAAPQAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTASG 426
Query: 200 SSMNSLVTPNVSAILSKLRD 259
SS + + L ++ D
Sbjct: 427 SSSKKSRSDSAGLALERIAD 446
>10_03_0048 - 7360230-7360805,7361480-7361791,7361853-7362179
Length = 404
Score = 32.3 bits (70), Expect = 0.44
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 26 HSLVS*PG*GVNRPRRIVAWYSCDRS--ASAPRPAPVTTQPATASMRH*RRPAAVKVEIS 199
HS V+ G P+ V W + D + A+A RP P T P A +RPAA
Sbjct: 245 HSAVA--GAAPQAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTASG 302
Query: 200 SSMNSLVTPNVSAILSKLRD 259
SS + + L ++ D
Sbjct: 303 SSSKKSRSDSAGLALERIAD 322
>01_06_1065 -
34238812-34239307,34239583-34240154,34241687-34241998,
34242060-34242386
Length = 568
Score = 32.3 bits (70), Expect = 0.44
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 26 HSLVS*PG*GVNRPRRIVAWYSCDRS--ASAPRPAPVTTQPATASMRH*RRPAAVKVEIS 199
HS V+ G P+ V W + D + A+A RP P T P A +RPAA
Sbjct: 245 HSAVA--GAAPQAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTASG 302
Query: 200 SSMNSLVTPNVSAILSKLRD 259
SS + + L ++ D
Sbjct: 303 SSSKKSRSDSAGLALERIAD 322
>03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032
Length = 429
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 65 PRRIVAWYSCDRS--ASAPRPAPVTTQPATASMRH*RRPAAVKVEISSSMNSLVTPNVSA 238
P+ V W + D + A+A RP P T P A +RPAA SS + +
Sbjct: 352 PQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTPASGSSSKKSRSDSAGL 411
Query: 239 ILSKLRD 259
L ++ D
Sbjct: 412 ALERIAD 418
>11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 456 QALRSRFPELRELVESLHE 400
Q L S FPELR+L+E +HE
Sbjct: 1080 QVLVSLFPELRQLIEDIHE 1098
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Frame = +2
Query: 89 SCDRSASAPRPAPVTTQPATAS--------MRH*RRPAAVKVEISSSMNSLVTP 226
S SAS PRP P TT A A+ H RRPAA +++S SL P
Sbjct: 455 SATSSASRPRPPPTTTTAAAANGHLAASQPQPHRRRPAAT-ATVATSSASLPAP 507
>11_06_0769 + 27156153-27156313,27156593-27156611
Length = 59
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 180 AAGRLQCRIDAVAGCVVTGAGR-GADADRSQLYQATIRRGR 61
AA L C + G ++ A R G+D +RS L A +RR R
Sbjct: 6 AAALLACGVLGAIGGILMAANRFGSDRERSPLAAAAVRRAR 46
>04_03_0567 + 17217581-17217741,17218020-17218047
Length = 62
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 180 AAGRLQCRIDAVAGCVVTGAGR-GADADRSQLYQATIRRGR 61
AA L C + G ++ A R G+D +RS L A +RR R
Sbjct: 6 AAALLACGVLGAIGGILMAANRFGSDRERSPLAAAAVRRAR 46
>10_02_0145 -
5817684-5817751,5817850-5817955,5818145-5818222,
5818334-5818380,5818476-5818557,5818688-5818829,
5819027-5819142,5819244-5819318,5819413-5819531,
5820569-5820636,5820739-5820803,5820887-5820968,
5821462-5821514,5821589-5821711,5821986-5822054,
5822581-5822649,5822735-5822786,5823423-5823475,
5823562-5823654,5823762-5823806,5824616-5824777
Length = 588
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 101 SASAPRPAPVTTQPATASMRH*RRPAAVKVEISSS 205
SA+A RPAP+ +P + R RR + V SSS
Sbjct: 14 SAAAARPAPLAARPGGGARRVHRRHSLAVVRCSSS 48
>08_01_0623 - 5435075-5435381,5435461-5435844,5436240-5436571
Length = 340
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/87 (25%), Positives = 38/87 (43%)
Frame = -2
Query: 543 IIQYCVLACALALERHALQSALRRQGAAVQALRSRFPELRELVESLHECRYADFLKSLAW 364
++ Y V + L+ L + G ++ L +R P L E +E H ADF K +
Sbjct: 104 LLDYIVSRASSTLKSIRLIACTFVWGQSLATLAARCPLLEE-IECSHHKMSADFFKYVGI 162
Query: 363 VETQICVDPVFHPHYQHYVREARIKAY 283
V Q+ V P++ + E +K +
Sbjct: 163 VRPQLKRLRVHMPYFDYDAMEDEMKEH 189
>02_02_0218 - 7975237-7975934,7976896-7977721
Length = 507
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 104 ASAPRPAPVTTQPATASMRH*RR 172
ASAP PAP T P++ +H R+
Sbjct: 255 ASAPAPAPATMTPSSGGKKHKRK 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,496,287
Number of Sequences: 37544
Number of extensions: 411735
Number of successful extensions: 1485
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -