Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_E20
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68227-6|CAA92512.1| 410|Caenorhabditis elegans Hypothetical pr... 160 1e-39
AL132895-1|CAC14399.1| 601|Caenorhabditis elegans Hypothetical ... 40 0.001
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 36 0.032
CU457741-16|CAM36358.1| 312|Caenorhabditis elegans Hypothetical... 33 0.30
AC006730-2|AAK72091.1| 322|Caenorhabditis elegans Serpentine re... 29 3.7
Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical p... 29 4.8
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein. 28 8.5
AC024852-4|AAT81182.1| 794|Caenorhabditis elegans Conserved oli... 28 8.5
AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic avoid... 28 8.5
AB212858-1|BAE66673.1| 792|Caenorhabditis elegans COGC-3 protein. 28 8.5
>Z68227-6|CAA92512.1| 410|Caenorhabditis elegans Hypothetical
protein F49C12.8 protein.
Length = 410
Score = 160 bits (388), Expect = 1e-39
Identities = 87/228 (38%), Positives = 137/228 (60%), Gaps = 6/228 (2%)
Frame = -2
Query: 729 MGKAINKAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAELFIDCVSTFESYELVDF 550
+ K I KA EL+++GGDW +N+L++YEA+Y ++VRD++ AA+LF++ V TF SYEL+ +
Sbjct: 171 INKFITKAKELMEQGGDWERKNRLRSYEALYRMSVRDFAGAADLFLEAVPTFGSYELMTY 230
Query: 549 GTIIQYCVLACALALERHALQSALRRQGAAVQ-----ALRSRFPELRELVESLHECRYAD 385
+I Y V+ AL+R L++ + R + L +RE +ES ++C Y
Sbjct: 231 ENLILYTVITTTFALDRPDLRTKVIRCNEVQEQLTGGGLNGTLIPVREYLESYYDCHYDR 290
Query: 384 FLKSLAWVETQ-ICVDPVFHPHYQHYVREARIKAYVQLLRAYRSLSLDNIADTFGVTREF 208
F LA +E++ D PH+ +Y R R +AY Q L Y+++ +D +A FGV+R F
Sbjct: 291 FFIQLAALESERFKFDRYLSPHFNYYSRGMRHRAYEQFLTPYKTVRIDMMAKDFGVSRAF 350
Query: 207 IEEEISTFTAAGRLQCRIDAVAGCVVTGAGRGADADRSQLYQATIRRG 64
I+ E+ A G+LQCRIDAV G V+ R + ++ LY+A I+ G
Sbjct: 351 IDRELHRLIATGQLQCRIDAVNG-VIEVNHRDS---KNHLYKAVIKDG 394
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = -3
Query: 68 EGDLLLNRVKKLASVIN 18
+GD+LLNR++KLA VIN
Sbjct: 393 DGDILLNRIQKLARVIN 409
>AL132895-1|CAC14399.1| 601|Caenorhabditis elegans Hypothetical
protein Y59A8A.1 protein.
Length = 601
Score = 40.3 bits (90), Expect = 0.001
Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 1/178 (0%)
Frame = -2
Query: 663 KLKAYEAIYCLAVRDYSHAAELFIDC-VSTFESYELVDFGTIIQYCVLACALALERHALQ 487
K A + + L + YS E + +S V + Y +L+ + R L+
Sbjct: 317 KCLAAQVLLKLRNKRYSQVVETILQIKTECLQSKWFVTSSDLGIYGMLSAMATMSRADLK 376
Query: 486 SALRRQGAAVQALRSRFPELRELVESLHECRYADFLKSLAWVETQICVDPVFHPHYQHYV 307
+ G + L S P+L EL+ S R+ + + V+ ++ +DP +
Sbjct: 377 LQVSGNGTFRKLLESE-PQLIELLGSYTSSRFGRCFEIMRSVKPRLLLDPFISRNVDELF 435
Query: 306 REARIKAYVQLLRAYRSLSLDNIADTFGVTREFIEEEISTFTAAGRLQCRIDAVAGCV 133
+ R K +Q L+ Y ++ + +A+ G++ ++ + + +ID G V
Sbjct: 436 EKIRQKCVLQYLQPYSTIKMATMAEAVGMSSAELQLSLLELIEQKHVSLKIDQNEGIV 493
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 35.9 bits (79), Expect = 0.032
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 62 RPRRIVAWYSCDRSASAPRPAPVTTQPATASMRH*RRPAAVKVEISSSMNSLVTPNVSAI 241
RP ++A S S PRP+P T P A++R + AV + + +S+VTP+ S
Sbjct: 625 RPASVIAPSSSVVPKSQPRPSPTTRPPTRATIRPTPQNKAVTSRPAPATSSVVTPSPSQS 684
Query: 242 LSK 250
L++
Sbjct: 685 LTQ 687
>CU457741-16|CAM36358.1| 312|Caenorhabditis elegans Hypothetical
protein C42C1.15 protein.
Length = 312
Score = 32.7 bits (71), Expect = 0.30
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = -2
Query: 501 RHALQSALRRQ--GAAVQALRSRFPELRELVESLHECRYADFLKSLAWVETQICVDPVFH 328
++ALQ L + G VQA+R P++ E + +E A+ K L ETQ V+ +
Sbjct: 147 KNALQEDLVKMAPGLYVQAVRVTKPKIPEAIRLNYEKMEAEKTKLLVAQETQKVVEKLAE 206
Query: 327 PHYQHYVREARIKAYVQLLRAYRSLS 250
+ V EA A V L+ R LS
Sbjct: 207 TERKKAVIEAEKAAQVALIHQKRLLS 232
>AC006730-2|AAK72091.1| 322|Caenorhabditis elegans Serpentine
receptor, class i protein34 protein.
Length = 322
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -2
Query: 639 YCLAVRDYSHAAELFIDCVSTFESYELVDFGTIIQYCVLACALALERHALQSALRRQ 469
YC V S + + + F+SY++V+F QY +LA ++ + LQ + Q
Sbjct: 14 YCYIVGAVSFVLNVLVILIIIFKSYKIVEF----QYMLLAFQISCTNYVLQLTILSQ 66
>Z73098-10|CAA97336.2| 391|Caenorhabditis elegans Hypothetical
protein T21C9.9 protein.
Length = 391
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 101 SASAPRPAPVTTQPATASMRH*RRPAAVKVEISSSMNSLVTPN 229
S APRPAP QP R +PAA E++ + + + N
Sbjct: 110 SRPAPRPAPAPYQPPRVQERPYVQPAAPVAELAETRKNTLHDN 152
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 95 DRSASAPRPAPVTTQPAT 148
D S P+PAPVT PAT
Sbjct: 2299 DMDTSTPKPAPVTRSPAT 2316
>AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein.
Length = 820
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +2
Query: 176 AAVKVEISSSMNSLVTPNVSAILSKLRD 259
+A +E+ S NSLV PN AILSKL D
Sbjct: 557 SAQAIELYSQANSLV-PNDPAILSKLAD 583
>AC024852-4|AAT81182.1| 794|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 3, isoform a
protein.
Length = 794
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 465 AAVQALRSRFPELRELVESLHECRYADFLK 376
A++ + RF + E E L EC+YA F K
Sbjct: 250 ASINVVEQRFSAVPEFEEMLAECQYAYFAK 279
>AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic
avoidance abnormal protein5 protein.
Length = 820
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +2
Query: 176 AAVKVEISSSMNSLVTPNVSAILSKLRD 259
+A +E+ S NSLV PN AILSKL D
Sbjct: 557 SAQAIELYSQANSLV-PNDPAILSKLAD 583
>AB212858-1|BAE66673.1| 792|Caenorhabditis elegans COGC-3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 465 AAVQALRSRFPELRELVESLHECRYADFLK 376
A++ + RF + E E L EC+YA F K
Sbjct: 250 ASINVVEQRFSAVPEFEEMLAECQYAYFAK 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,108,879
Number of Sequences: 27780
Number of extensions: 328827
Number of successful extensions: 985
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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