Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_E20
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.78 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.4  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          23   3.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   7.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 299 LASRHMFSCCAPTDLSAWIILLTRLVSP 216
           LA  H F+   P +++ WI   +R+V P
Sbjct: 426 LAQLHNFTTMTPQEIAQWIDRRSRIVFP 453


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 352 LSFHPSKAFQEISIST 399
           L FHP  +F+E ++ST
Sbjct: 391 LFFHPMSSFREFAVST 406


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 295 ASLTHIVLVMRVEYWVYTDLSFHPSK 372
           AS+ ++ ++    YW  TD   +PSK
Sbjct: 132 ASILNLCVISLDRYWAITDPFTYPSK 157


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 331 EYWVYTDLSFHPSKA 375
           E W++ D+SF P K+
Sbjct: 66  ENWIHVDISFLPEKS 80


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 343 YTDLSFHPSKAFQEISISTLMQRFN*LS 426
           Y  L FHP  + +E ++ST + R   LS
Sbjct: 271 YRTLFFHPLSSRREFAVSTRILRDENLS 298


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 138  CVVTGAGRGADADRSQLYQAT 76
            CV+ G G G+D D   +YQ T
Sbjct: 1606 CVLRGKGHGSDKD-DVVYQQT 1625


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 553 FWYNHPVLCSRLCLG 509
           FW NH    +R+ LG
Sbjct: 263 FWINHEATSARVALG 277


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 336 VFHPHYQHY 310
           V H HYQHY
Sbjct: 3   VLHIHYQHY 11


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,332
Number of Sequences: 438
Number of extensions: 3652
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)