Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_E18
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757     32   0.44 
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     31   0.58 
06_01_0714 + 5190665-5191279                                           28   5.4  
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571...    28   7.2  
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260...    27   9.5  
01_06_0287 + 28224956-28225216,28225385-28225641,28225789-282258...    27   9.5  

>09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757
          Length = 817

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -3

Query: 620 LDLRAARWGLADTSHQHVGGMNGGSDYVEGGFLADGHTL-----TAEERAFLQSN 471
           LD  AA  G AD S +H+    GG D  +G +  + HTL     T     F+Q+N
Sbjct: 342 LDAAAASPGDADGSRRHIVSFIGGIDLCDGRYDDENHTLFRDLDTTYRHDFMQNN 396


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = -2

Query: 552 RVGLRGGRFPGGRSHADRRG 493
           R G RGGRFPGGR    RRG
Sbjct: 41  RNGPRGGRFPGGRGVEPRRG 60


>06_01_0714 + 5190665-5191279
          Length = 204

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +3

Query: 372 ALLHFRIHSSLPRVVLKLLQYIVVYGLVLVRRQV-----ALQEGALLGGQRVTVRQETAL 536
           AL++ RI       V ++++  VVY ++ +   V     A Q GA+ GGQ +       +
Sbjct: 65  ALIYARIGGGGGGAVDRMIRPQVVYLILFLSSGVLHVFLAPQPGAIDGGQDLLPLAVAVV 124

Query: 537 HVIRPAVHA 563
           HV+RPA  A
Sbjct: 125 HVLRPAAAA 133


>02_01_0767 -
           5709733-5709789,5709845-5709871,5710374-5710449,
           5710542-5710661,5711321-5711421,5711618-5711743,
           5713504-5713596,5713694-5713816,5713889-5714032,
           5714539-5714672,5714893-5715002,5715315-5715430,
           5716438-5716572,5716650-5716820,5717545-5717709,
           5718165-5718242,5718313-5718445,5718551-5718741,
           5718842-5718914,5719001-5719056,5719142-5719300,
           5719383-5719496,5719562-5719654,5720544-5720726,
           5720801-5720878,5720966-5721052,5721135-5721216,
           5721288-5721400,5721486-5721636,5721759-5721877,
           5721966-5722163,5722377-5722442,5723837-5723957,
           5724224-5724343,5724412-5724542,5725210-5725341,
           5725418-5725519,5726231-5726437,5726510-5726626,
           5727468-5727623,5727721-5727810,5728624-5728848,
           5728969-5729091,5729202-5729284,5729459-5729618,
           5730264-5730374,5730652-5730751,5731375-5731454,
           5731752-5731847,5731961-5732110
          Length = 1991

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 462 RRQVALQEGALLGGQRVTVRQETAL-HVIRPAVHAANVLVRGVGEPPAGRAQVE 620
           R  +A+ E ALLG    +  Q   L H +R A  A   L+   G   + R QVE
Sbjct: 8   RELLAVVEAALLGPSPPSPAQRVELLHAVRDAAPAFRALLSYPGPKASDRTQVE 61


>05_07_0148 +
           28024820-28025293,28025655-28025702,28026034-28026080,
           28026334-28026496,28026595-28026656,28026820-28027003,
           28027093-28027182,28027553-28027686,28027747-28027936,
           28028103-28029033,28029860-28030065
          Length = 842

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 638 PXVRAVLDLRAA--RWGLADTSHQHVGGMNGGSDYVEGGFLADGHTLTAE 495
           P  RAVLDL AA   W     +H  VG    G D V    +   H+LT +
Sbjct: 41  PTARAVLDLCAAPGGWVQVAVNHAPVGAFVVGVDLVPIRPIRGAHSLTED 90


>01_06_0287 +
           28224956-28225216,28225385-28225641,28225789-28225899,
           28225926-28226021,28226078-28226134,28226348-28226438,
           28226610-28226678,28227091-28227180,28227390-28227440,
           28227535-28227753,28228064-28228127,28228211-28228299
          Length = 484

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 611 RAARWGLADTSHQHVGGMNGGSDYVEGGF 525
           R ARWG    S    GG + GS    GG+
Sbjct: 45  RRARWGNGTRSSDSFGGRSRGSGAARGGY 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,519
Number of Sequences: 37544
Number of extensions: 263991
Number of successful extensions: 745
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)